Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g01620 | ATGCCACTCGATCACCACTCCCAACACTTCGACCAAACACGCAGTTCCGTCGAAGCCGATGATGATTCCCACCATCTCCACCCTACTCGTTCCACGACGTCTGTCGTCAATGGAGCCGACTGCGAGAATGCCGGCGATGACCTTTTCGTCCCTCCCCTGAACTTTGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTACTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAGCATGGATTTTCTCAAGTCGAATGGAATTCGATTGTTTCAACTCGGGATTGAAGGTACTAAGGAGCCTTTTGTGAACATTCCAGACAACACAATTCGTGAAGCACTTAAAATTATTCTCGATGTGAGGAATCGCCCAGTTCTAATCCATTGCAAACGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCCTCAGTCTTTTATGAGTATCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGATGTTTCTGGCTTGAAGTATCTGCCATCTTCATTTTCTTGTTCCAAAAGATAA | 636 | 47.48 | MPLDHHSQHFDQTRSSVEADDDSHHLHPTRSTTSVVNGADCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFYFLQTLGLRSIICLCPEPYPEASMDFLKSNGIRLFQLGIEGTKEPFVNIPDNTIREALKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFYEYQRFAAAKARVSDQRFIELFDVSGLKYLPSSFSCSKR | 211 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 12839350 | 12842335 | - | Carg04643-RA | Car11g01620 | 157573 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g01620 | 211 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 144 | 154 | IPR016130 | GO:0016311|GO:0016791 | |
| Car11g01620 | 211 | Pfam | Tyrosine phosphatase family | 50 | 197 | IPR004861 | - | |
| Car11g01620 | 211 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Car11g01620 | 211 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 54 | 208 | IPR020422 | GO:0006470|GO:0008138 | |
| Car11g01620 | 211 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car02g00052 | Car11g01620 | CCT | |
| Car11g01620 | Car20g00205 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car10g00750 | Car-Chr10:3963276 | Car11g01620 | Car-Chr11:12839350 | 7.96E-75 | dispersed | |
| Car11g00841 | Car-Chr11:5046967 | Car11g01620 | Car-Chr11:12839350 | 1.71E-73 | dispersed | |
| Car11g01620 | Car-Chr11:12839350 | Car19g00825 | Car-Chr19:8790672 | 4.88E-124 | wgd | |
| Car11g01620 | Car-Chr11:12839350 | Car02g00052 | Car-Chr2:359848 | 7.75E-87 | wgd | |
| Car11g01620 | Car-Chr11:12839350 | Car20g00205 | Car-Chr20:1163440 | 5.91E-102 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g01620 | K18045 | - | csv:101209768 | 353.214 |