Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01646 ATGTCATCTGGAAATAGTCTGAATACAGAATTGTCAAAGAAAACATCCTTCCTTGGTTTGTCCTTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATTTTGTCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCTGAAAACTTCTCTGTTTCTCAAATACCAAATGTCTCAAAGGATATCAAGGTGGACAGAATAGCGACTCAATCTGCTCACCACAATCGTCTTGAGAGTCTATATCTTTCCATTAATGATAAATCTAGTGACAAGAACTCGGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGATCATGATAACATAAGCCAATGCAGCTCCAATTATCATAATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGGGTTCCATGTCATATGGAGCGTATGGAGGACTTGTAACTGCCTCTCCTCTTGTTGGCTTGCCCGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTTGAATATGCAACAAATCGTTTTTCTGCTGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAAGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGCCATGTAAGGCACAAGAATCTTGTACGGCTTCTGGGCTACTGCATAGAAGGAGTTCATAGGATGCTGGTTTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCTATGCGCCAACATGGCACCCTTACATGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCTTATTTACATGAAGCAATTGAACCGAAGGTTGTCCATAGAGACATAAAATCAAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGGTTGGCTAAACTGTTGGATGCAGGGGAGAGTCATATCACGACTAGAGTAATGGGAACATTTGGCTATGTGGCACCAGAGTATGCAAACACGGGCTTGTTAAATGAGAAGAGTGACATTTACAGCTTCGGCGTTCTCCTTCTAGAAGCAATTACAGGAAGAGACCCTGTGGACTATGGCCGTCCTGCCAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCTGAGGAAGTCATGGACCCAAGTTTTGAAACGAAACCCGGTACTCGGGCGTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGAGTCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCGTCACGTGAGGATCGGAGGAGCCAAAAGAGCAGCACAGCTAATTCGGAGATTGAATCCACAAAAGAGAGCTCCGGACAAGGCGAGGTGGGAAGTAATGCATGA 1509 43.41 MSSGNSLNTELSKKTSFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSVSQIPNVSKDIKVDRIATQSAHHNRLESLYLSINDKSSDKNSEKMIGHLGMSKSSDHDNISQCSSNYHNERVFSSHSGEEGSSGTVRKQGSMSYGAYGGLVTASPLVGLPEISHLGWGHWFTLRDLEYATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVMDPSFETKPGTRALKRALLIALRCVDPEADKRPKMSQVVRMLEADDYPSREDRRSQKSSTANSEIESTKESSGQGEVGSNA 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12954273 12957155 - Carg04669-RA Car11g01646 157599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01646 502 MobiDBLite consensus disorder prediction 481 502 - -
Car11g01646 502 ProSiteProfiles Protein kinase domain profile. 192 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g01646 502 MobiDBLite consensus disorder prediction 455 502 - -
Car11g01646 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Car11g01646 502 Pfam Protein kinase domain 194 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g01646 502 Coils Coil 212 232 - -
Car11g01646 502 MobiDBLite consensus disorder prediction 455 480 - -
Car11g01646 502 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00930 Car-Chr5:9010756 Car11g01646 Car-Chr11:12954273 2.75E-46 dispersed
Car11g00931 Car-Chr11:5941496 Car11g01646 Car-Chr11:12954273 2.32E-151 dispersed
Car11g01646 Car-Chr11:12954273 Car19g00506 Car-Chr19:6726105 1.30E-153 dispersed
Car17g00370 Car-Chr17:2362437 Car11g01646 Car-Chr11:12954273 7.71E-94 dispersed
Car19g00858 Car-Chr19:8944370 Car11g01646 Car-Chr11:12954273 0 transposed
Car11g01646 Car-Chr11:12954273 Car19g00857 Car-Chr19:8942705 1.20E-96 wgd
Car11g01646 Car-Chr11:12954273 Car02g00029 Car-Chr2:243027 0 wgd
Car11g01646 Car-Chr11:12954273 Car20g00227 Car-Chr20:1307189 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89210 PF00069 Pkinase 8.90E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01646 - - csv:101212378 936.021