Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car11g01652 | ATGCCCAAAGAGATGATGAAGGGGAGCTGCAAAAAGGGTGCCCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGTTGCACTCAAGACTGCGTTTTTGCTCCTTATTTCCCAGCTGATCAACCCCACAAATTCTCCAGTGTTCACAAGGTGTTTGGAGCTAGCAACGTCACCAAATTGTTGCAGGAGTTACCCGAGCAACACCGGAGCGACGCAGTGAGTTCGATGGTGTATGAAGCGAATGCGAGGATTCGAGACCCAATTTACGGGTGTGTGGGAACAATATCGTGCCTACAACGACAAGTAGATGCGCTCCAACAACAATTGGCGATGACACAAGCCCAGCTGCTTCATTTCAAAATGGCCCAATTTTCTTTGGCATCACAACCATCGTCCACCGATGATGTCCTCCCTTCGCCGCCCAATACCAATGTGCCCTCATTCACCTCCTTGTGA | 459 | 51.63 | MPKEMMKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKMAQFSLASQPSSTDDVLPSPPNTNVPSFTSL | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12991308 | 12992443 | + | Carg04675-RA | Car11g01652 | 157605 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car11g01652 | 152 | Coils | Coil | 96 | 116 | - | - | |
Car11g01652 | 152 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 114 | IPR004883 | - | |
Car11g01652 | 152 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - | |
Car11g01652 | 152 | MobiDBLite | consensus disorder prediction | 131 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car02g00516 | Car-Chr2:4069449 | Car11g01652 | Car-Chr11:12991308 | 6.16E-53 | dispersed | |
Car04g00127 | Car-Chr4:676771 | Car11g01652 | Car-Chr11:12991308 | 2.94E-55 | dispersed | |
Car04g01025 | Car-Chr4:5879567 | Car11g01652 | Car-Chr11:12991308 | 4.76E-55 | dispersed | |
Car11g01652 | Car-Chr11:12991308 | Car13g00164 | Car-Chr13:1477601 | 6.74E-50 | dispersed | |
Car18g00177 | Car-Chr18:974033 | Car11g01652 | Car-Chr11:12991308 | 4.00E-47 | dispersed | |
Car02g00017 | Car-Chr2:178245 | Car11g01652 | Car-Chr11:12991308 | 2.41E-67 | transposed | |
Car13g00345 | Car-Chr13:6076039 | Car11g01652 | Car-Chr11:12991308 | 3.38E-61 | transposed | |
Car11g01652 | Car-Chr11:12991308 | Car19g00864 | Car-Chr19:8993376 | 1.16E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4365 | PF03195 | LOB | 2.60E-43 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car11g01652 | - | - | csv:101213100 | 237.654 |