Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g01652 ATGCCCAAAGAGATGATGAAGGGGAGCTGCAAAAAGGGTGCCCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGTTGCACTCAAGACTGCGTTTTTGCTCCTTATTTCCCAGCTGATCAACCCCACAAATTCTCCAGTGTTCACAAGGTGTTTGGAGCTAGCAACGTCACCAAATTGTTGCAGGAGTTACCCGAGCAACACCGGAGCGACGCAGTGAGTTCGATGGTGTATGAAGCGAATGCGAGGATTCGAGACCCAATTTACGGGTGTGTGGGAACAATATCGTGCCTACAACGACAAGTAGATGCGCTCCAACAACAATTGGCGATGACACAAGCCCAGCTGCTTCATTTCAAAATGGCCCAATTTTCTTTGGCATCACAACCATCGTCCACCGATGATGTCCTCCCTTCGCCGCCCAATACCAATGTGCCCTCATTCACCTCCTTGTGA 459 51.63 MPKEMMKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKMAQFSLASQPSSTDDVLPSPPNTNVPSFTSL 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12991308 12992443 + Carg04675-RA Car11g01652 157605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g01652 152 Coils Coil 96 116 - -
Car11g01652 152 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Car11g01652 152 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Car11g01652 152 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00516 Car-Chr2:4069449 Car11g01652 Car-Chr11:12991308 6.16E-53 dispersed
Car04g00127 Car-Chr4:676771 Car11g01652 Car-Chr11:12991308 2.94E-55 dispersed
Car04g01025 Car-Chr4:5879567 Car11g01652 Car-Chr11:12991308 4.76E-55 dispersed
Car11g01652 Car-Chr11:12991308 Car13g00164 Car-Chr13:1477601 6.74E-50 dispersed
Car18g00177 Car-Chr18:974033 Car11g01652 Car-Chr11:12991308 4.00E-47 dispersed
Car02g00017 Car-Chr2:178245 Car11g01652 Car-Chr11:12991308 2.41E-67 transposed
Car13g00345 Car-Chr13:6076039 Car11g01652 Car-Chr11:12991308 3.38E-61 transposed
Car11g01652 Car-Chr11:12991308 Car19g00864 Car-Chr19:8993376 1.16E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4365 PF03195 LOB 2.60E-43 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g01652 - - csv:101213100 237.654