Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00001 ATGGCGGCTCGGAGGATATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCACCAGCTCTTCTTTCCAAAGGGAGGAGGCCTTCCGGTGGCAGAACAACTGGCAAATATAGCACCTCCGCTGCTGTTGAGGATCCAATTACTCCATCTGTGAAAGTAAATTATACCCAGCTGCTAATCAACGGACAGTTTGTGGATTCAGTTTCAGGAAAAACTTTTCCTACACTGGACCCAAGGACTGGAGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAGAGATATTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTCGATGATGGGCCTTGGCCTAGAATGACTGCTTATGAAAGGTCAAAGATACTTTTGCGATTTGCTGATTTGGTTGAAAAGCATGCCGATGAATGTGCAGCACTCGAAACTTGGGACAATGGGAAAACATACGAACAGTCAGCCAAATTGGAAGTCCCAATGTTTGTACGCCTCTTCCGATATTATGCGGGGTGGGCCGATAAGATTCACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTGCAGACCTTGCACGAACCAATTGGTGTTGCGGGTCAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGTCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTATCTATGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGCGGGCGTTCTCAATATTGTTTCCGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGACAAGCTTGCTTTTACTGGATCAACCGAAACAGGGCAGATTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACTTTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCCCGTACTTTTGTTCATGAAAAAGTGTATGATGAGTTTCTAGAAAAATCAAGGAAACGAGCTGCAAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGACGGCGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGGATTGAAGGTGGAGCCACTCTCGAGGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATGTCCAGCCAACAGTTTTCTCGAACGTCAAGGATGACATGACAATTGCTCAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGGTTGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCGGCTGGGGTGTTTACTCAAAATATCGACACAGCCAACAGGCTGACCCGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTCGATATATTTGATGCTGCGATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGACGAGAAAAGGGTATTTACAGCCTCAGCAATTATCTGCAAGTGAAGGCTGTTGTCACTCCTTTGAACAACCCTGCTTGGCTCTAA 1608 46.95 MAARRISSLLSRSLASSPALLSKGRRPSGGRTTGKYSTSAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEVIANVAEGDARDIDLAVSAARKAFDDGPWPRMTAYERSKILLRFADLVEKHADECAALETWDNGKTYEQSAKLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSAIYVAKLLHEAGLPAGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGQIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFLEKSRKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAQEEIFGPVQTILKYKEVEEVIRRANASRYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLNNPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9331 15225 - Carg20519-RA Car12g00001 157617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00001 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Car12g00001 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Car12g00001 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00001 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101202756 970.304
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01144 Car-Chr8:7703369 Car12g00001 Car-Chr12:9331 8.46E-66 dispersed
Car10g00560 Car-Chr10:2833711 Car12g00001 Car-Chr12:9331 2.23E-176 dispersed
Car11g00103 Car-Chr11:583895 Car12g00001 Car-Chr12:9331 0 dispersed
Car11g00477 Car-Chr11:2612702 Car12g00001 Car-Chr12:9331 0 dispersed
Car12g00001 Car-Chr12:9331 Car20g00250 Car-Chr20:1444254 1.35E-107 dispersed
Car13g00771 Car-Chr13:8617992 Car12g00001 Car-Chr12:9331 5.63E-14 transposed
Car12g00001 Car-Chr12:9331 Car05g00003 Car-Chr5:17714 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00477 . 6 516 Aldehyde Dehydrogenase Gene Family AT3G24503 66.7 1.3e-205 713.0
Car10g00560 . 1 457 Aldehyde Dehydrogenase Gene Family AT3G24503 65.9 4.8e-187 651.4
Car12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 9.4e-159 557.4
Car11g00103 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.1e-154 542.0
Car11g00103 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 3.6e-257 884.4
Car12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 9.5e-250 859.8
Car05g00003 . 1 545 Aldehyde Dehydrogenase Gene Family AT3G48000 68.0 2.6e-223 771.9
Car11g00477 . 17 516 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 8.8e-155 544.3
Car10g00560 . 18 457 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 7.3e-141 498.0
Car12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 4.8e-169 591.3
Car11g00103 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 5.8e-167 584.3
Car05g00003 . 1 389 Aldehyde Dehydrogenase Gene Family AT1G23800 66.6 2.0e-146 516.2
Car11g00477 . 17 360 Aldehyde Dehydrogenase Gene Family AT1G23800 52.3 4.0e-99 359.0
Car04g01154 . 83 543 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 1.8e-168 589.7
Car09g00694 . 14 338 Aldehyde Dehydrogenase Gene Family AT4G34240 59.6 1.3e-118 424.1
Car02g01035 . 4 185 Aldehyde Dehydrogenase Gene Family AT4G34240 50.5 3.3e-45 180.3
Car04g01154 . 144 541 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 2.5e-165 578.9
Car09g00694 . 10 338 Aldehyde Dehydrogenase Gene Family AT1G44170 64.6 7.0e-131 464.5
Car02g01034 . 1 282 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 8.4e-76 281.6
Car16g00681 . 47 524 Aldehyde Dehydrogenase Gene Family AT4G36250 61.3 3.8e-181 631.7
Car02g01034 . 1 284 Aldehyde Dehydrogenase Gene Family AT4G36250 60.9 5.6e-100 362.1
Car20g00250 . 39 551 Aldehyde Dehydrogenase Gene Family AT1G79440 75.2 3.4e-228 788.1
Car02g00487 . 2 289 Aldehyde Dehydrogenase Gene Family AT1G79440 78.5 8.7e-131 464.5
Car11g01168 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.6 2.7e-245 845.1
Car03g00775 . 211 714 Aldehyde Dehydrogenase Gene Family AT2G14170 59.4 1.9e-166 583.2
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT1G74920 76.2 6.5e-229 790.4
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT3G48170 76.6 2.7e-230 795.0
Car12g01124 . 39 534 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.1e-267 916.8
Car13g00771 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 3.5e-263 904.4
Car17g00339 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 7.0e-278 953.4
Car08g01144 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.1 8.3e-271 929.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00001 Car_Chr12 FPKM 36.774765 42.576809 113.538521 115.623421 54.704361 54.771618 53.942291 31.062811 30.828085 29.578074