Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00001 ATGGCGGCTCGGAGGATATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCACCAGCTCTTCTTTCCAAAGGGAGGAGGCCTTCCGGTGGCAGAACAACTGGCAAATATAGCACCTCCGCTGCTGTTGAGGATCCAATTACTCCATCTGTGAAAGTAAATTATACCCAGCTGCTAATCAACGGACAGTTTGTGGATTCAGTTTCAGGAAAAACTTTTCCTACACTGGACCCAAGGACTGGAGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAGAGATATTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTCGATGATGGGCCTTGGCCTAGAATGACTGCTTATGAAAGGTCAAAGATACTTTTGCGATTTGCTGATTTGGTTGAAAAGCATGCCGATGAATGTGCAGCACTCGAAACTTGGGACAATGGGAAAACATACGAACAGTCAGCCAAATTGGAAGTCCCAATGTTTGTACGCCTCTTCCGATATTATGCGGGGTGGGCCGATAAGATTCACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTGCAGACCTTGCACGAACCAATTGGTGTTGCGGGTCAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGTCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTATCTATGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGCGGGCGTTCTCAATATTGTTTCCGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGACAAGCTTGCTTTTACTGGATCAACCGAAACAGGGCAGATTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACTTTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCCCGTACTTTTGTTCATGAAAAAGTGTATGATGAGTTTCTAGAAAAATCAAGGAAACGAGCTGCAAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGACGGCGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGGATTGAAGGTGGAGCCACTCTCGAGGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATGTCCAGCCAACAGTTTTCTCGAACGTCAAGGATGACATGACAATTGCTCAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGGTTGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCGGCTGGGGTGTTTACTCAAAATATCGACACAGCCAACAGGCTGACCCGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTCGATATATTTGATGCTGCGATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGACGAGAAAAGGGTATTTACAGCCTCAGCAATTATCTGCAAGTGAAGGCTGTTGTCACTCCTTTGAACAACCCTGCTTGGCTCTAA 1608 46.95 MAARRISSLLSRSLASSPALLSKGRRPSGGRTTGKYSTSAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEVIANVAEGDARDIDLAVSAARKAFDDGPWPRMTAYERSKILLRFADLVEKHADECAALETWDNGKTYEQSAKLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSAIYVAKLLHEAGLPAGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGQIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFLEKSRKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAQEEIFGPVQTILKYKEVEEVIRRANASRYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLNNPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9331 15225 - Carg20519-RA Car12g00001 157617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00001 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Car12g00001 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Car12g00001 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01144 Car-Chr8:7703369 Car12g00001 Car-Chr12:9331 8.46E-66 dispersed
Car10g00560 Car-Chr10:2833711 Car12g00001 Car-Chr12:9331 2.23E-176 dispersed
Car11g00103 Car-Chr11:583895 Car12g00001 Car-Chr12:9331 0 dispersed
Car11g00477 Car-Chr11:2612702 Car12g00001 Car-Chr12:9331 0 dispersed
Car12g00001 Car-Chr12:9331 Car20g00250 Car-Chr20:1444254 1.35E-107 dispersed
Car13g00771 Car-Chr13:8617992 Car12g00001 Car-Chr12:9331 5.63E-14 transposed
Car12g00001 Car-Chr12:9331 Car05g00003 Car-Chr5:17714 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00001 K00128 - csv:101202756 970.304