Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00019 ATGGAACTGGAACTCTGTTTCTTCTTATGCCATGCCGTTTTTACTGCTTTTCCACTCCTCCATCTTGCTTCTGCTACCCTCTCTCCTTCTGGTGTCAACTACGAAGTCGTGGCTTTGATGGCCATCAAAAATGATTTGATAGACCCCCACAATGTTTTGGAGAATTGGGACTCTAATTCAGTGGATCCTTGTAGCTGGAGAATGGTTACATGTTCTCCAGATGGATACGTTTCTGTTCTGGGGCTACCCAGCCAGAGTTTGTCAGGACTCTTATCCCCGGGGATTGGAAACCTCACCAAGTTAGAATCAGTGCTGCTTCAGAACAATGACATTTCGGGGCCAATTCCTGCATCCATTGGAAAGTTAGAGAACCTCCACACTCTTGATCTCTCCAATAATGTATTTAGTGGCCAAATACCCAGTTCCCTTGGGGACTTAAACAAGCTCAACTATTTAATTGTTGGTAACCCTCTGATCTGTGGTCCAAACAACTGTTCTTCCATCTTTCCGGAGCCGTTTTTGTTTGCCCCAGATGCTCTAGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTTCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGGGAGATCCAATTTCAGACTGAAGTTGAGATGATAAGTTTAGCTGTGCACCGAAATCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCTTTCATGCCCAATGGAAGCGTTGGATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGCACAGCTAGAGGATTGGTTTACTTGCACGAGCAGTGTGACCCTAAAATCATCCATCGTGATGTGAAGAAGTTGCACGAGGAAGGAAAGGTGAATGTGATGGTGGATAAGGATCTAAGAGGTAAGTTCGACAGAGTTGAGTTGGAGGAAATGGTCCAGGTGGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTGTGAAGTATTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCGCAGCACCTAGATGCGCCAAGATACCAGCGAGCGTGCGAGAATCCCCCTCAACGATCCTCTCATGGCAACTATTTCTTCCCTGTTTATTACCGCTCCACTCCCGTTGATTCTCTCTTTTCTTCCTGGTGTTTCTCCTTTTCATCTCCGTCCTTGTCTGATTTAACTTCTAAATCTTCCAAGTTCCCGACCCATGCTGCTCCCACGCGACCGTTTCTGCCAATTCCTCACCAAATGGCGTCGCCCTCCAATCATACGCCCAACACCACTGGGAGCTTTAAACTCAATGCCCATCCGCCAAATGGGTCGGGAATTGGAAATGGATCCATTTCCACCCGAGGAAAGTTGGGCCCTGGGAAGGAAAATGAAGAGGGAACCCCGAGTAACTCCATTTCCTTGAAAAACGATACTACTCTATATCAGGAGGAGAATATTCATTCTTCCAATGCTGACGACAAGAATGCGTCAGAAGGAAATGGAGGAAGAAATTCAAGCGAGAGAATTCAAATTACCGACAACTCTCAACCGATGGGCGCATCAAATGACAGCTTCGATGAGGAATGTGATATCTTTGATGGTAAATGGGTGAGGGACGATTCGAAGCCATATTATCCTCCAGGTTCTTGCCCTTACATTGATAGAGACTTTGACTGTCATCTTAATAGGAGGCCAGATGATGGATATGTCAAATGGAAATGGCAGCCAAATGGGTGCAACATTCCAAGGAACATGTGGGAGTCTCTGGTGTGCATTCTTCGTCATAGTATTGCCCACAAGGAAAGAGTGTATGAGATATCTGGAAGGACAGATTTCAAGAAGAAGGGCTTCTACGCCTTCCGGGAATCTACATTCGAGAGAGACAACGAAACGATGGAAACATTAAGATTGGATGAAATGGACGAGACGACCGAAATGTACCGTGATGCGGACGTTCTAGTGTTTAATACAGGCCATTGGTGGACTCATGAGAAAACTTCTAGGGGGGAAAACTATTACCAAGAAGGCAACCATTTGCACCCGAGACTGAAGGTGTTGGAAGCGTTTAAGAGGGCTCTCACCACTTGGGGTCAATGGATAGACAACAACGTTGATGGAAATCGAACTCTGGTTTTCTTCAGAGGGTATTCATATTCGCACTTCAGTGGTGGGCAGTGGAACTCGGGGGGTCAATGCGACAATGAAACGGAACCAATATATAAGGAAGCATACTTGGGGAAGTACCCAAAGAAAATGAGGGCTCTGGAGTATGTGATGGGGAAGATGAAAACGCGGACGTCCTACTTAAACATCACCAGGATGACTCATTATCGGAAGGATGCGCACCCTTCCATTTATAGAATGGAATACAAGACGGAGGAAGAAAGACGTGCAAGTGTGGGAGTTCAAGATTGCAGCCATTGGTGCTTGCCCGGGGTACCCGACACATGGAACGAGCTGCTTTATGTGTCTCTCTTAAGGATGGCCAACAAATTTTGGAGAGACTGA 2832 45.69 MELELCFFLCHAVFTAFPLLHLASATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSVLGLPSQSLSGLLSPGIGNLTKLESVLLQNNDISGPIPASIGKLENLHTLDLSNNVFSGQIPSSLGDLNKLNYLIVGNPLICGPNNCSSIFPEPFLFAPDALEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVGSRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKKLHEEGKVNVMVDKDLRGKFDRVELEEMVQVALLCTQFNPSHRPKMCEVLKMLEGDGLAEKWEASQHLDAPRYQRACENPPQRSSHGNYFFPVYYRSTPVDSLFSSWCFSFSSPSLSDLTSKSSKFPTHAAPTRPFLPIPHQMASPSNHTPNTTGSFKLNAHPPNGSGIGNGSISTRGKLGPGKENEEGTPSNSISLKNDTTLYQEENIHSSNADDKNASEGNGGRNSSERIQITDNSQPMGASNDSFDEECDIFDGKWVRDDSKPYYPPGSCPYIDRDFDCHLNRRPDDGYVKWKWQPNGCNIPRNMWESLVCILRHSIAHKERVYEISGRTDFKKKGFYAFRESTFERDNETMETLRLDEMDETTEMYRDADVLVFNTGHWWTHEKTSRGENYYQEGNHLHPRLKVLEAFKRALTTWGQWIDNNVDGNRTLVFFRGYSYSHFSGGQWNSGGQCDNETEPIYKEAYLGKYPKKMRALEYVMGKMKTRTSYLNITRMTHYRKDAHPSIYRMEYKTEEERRASVGVQDCSHWCLPGVPDTWNELLYVSLLRMANKFWRD 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 108429 114396 + Carg20501-RA Car12g00019 157635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00019 943 MobiDBLite consensus disorder prediction 572 630 - -
Car12g00019 943 ProSiteProfiles Protein kinase domain profile. 256 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00019 943 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 689 930 IPR026057 GO:0016740
Car12g00019 943 Pfam Protein kinase domain 257 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00019 943 Pfam PMR5 N terminal Domain 635 688 IPR025846 -
Car12g00019 943 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Car12g00019 943 MobiDBLite consensus disorder prediction 505 632 - -
Car12g00019 943 MobiDBLite consensus disorder prediction 528 559 - -
Car12g00019 943 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00019 Car-Chr12:108429 Car04g01612 Car-Chr4:9316188 4.88E-26 dispersed
Car04g00734 Car-Chr4:4261765 Car12g00019 Car-Chr12:108429 2.90E-79 transposed
Car05g00024 Car-Chr5:131296 Car12g00019 Car-Chr12:108429 0 transposed
Car12g00019 Car-Chr12:108429 Car05g00023 Car-Chr5:126905 2.24E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89211 PF13839 PC-Esterase 2.80E-70 CL0264 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00019 - - mcha:111004664 686.797