Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00022 ATGCGCTTCCTATCCCAACCAACCGCTTCTGTATGGAAGCTGCCAATGAACACTGCATCGCCACTTCTTCCCACATATGGCTTCTTCATCATTTTCATCACCGCTCTTTTCTTGCTTCAGTCCACGTCCACACTGGCTAACCCCAGATCCCAAACGGTGAACATACTTTGTTCCACCGTGTTAGAGCATAATACAACGGCTTTTGTGCCAAACTTCGTTGCCACCATGCAAATAATCAGCGATCAAATGCGAACTGGTGGTTTTGGAGTGGCACTGGCAGGGAAAGGGCCGGACGCCAACTACGGCCTCGCTCAATGTTACGGAGATTTGTCGCTGATGGATTGTGTGTTATGTTATGCCGAAGCTCGTACTGTCCTGCCTCAGTGCTTTCCTTTCAATGGTGGCCGAATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATAACGAATATAAGGGGCCTCTGGACAGGGCTGTGTGCGGCAACACCTCCATTACTACCAACTCCCTTTTTGGGCAGTCGGCCAGGCAGGCTGTGGGCCGAGCAGTTGACATTGCACCCAACAATGGAGGGTATGCCAGAGTTGAAGTGCCTGTCCCTGGAACCTCCAATCTCTCGGTCTACCTGTTGGCTCAGTGCTGGAAGAATCTGAAACGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCCTCAAATGCTTGCCTCAGTCCGAAGCAAGGGCCCTCAACACTGGCTGCTTCATCAGATACTCTAGCGTTGACTTCCTGAATAGGGAAGCTCGAGCTGCAAGGTTCAGAGGTAACATTATAGCAATTGTAATCTCAGTGGTAAGCTCGATTGCTGTTTTGGTCGCTGGTGTGGTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGATGAAACGAAAAGGTTCAAATGATGCAAACAAGATGGTGAAAACACTCAACAATAGCAGCTTGAGTTTCAAGTACTCTACCCTTGAAAAGGCAACAGAATGTTTTGCTGAGGCTAACATGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGCCAGTCTTCTTATTGGAGTTCTGTCGGACGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAATAACAAACATAGAGCAGCAGACTTCTACAATGAAGTGAACATAATTAGTAGTGTGGAGCACAAAAATTTAGTAAGGTTGCTTGGCTGTAGTTGTTCTGGACCTGAAAGTCTGCTCGTCTATGAATTCCTTCCCAACAAGAGCCTCGACCGCTTCATTTTTGATCGAGACAGAGGCAGATCACTCAATTGGGAGAAGAGATTTGATATTATCGTGGGAACAGTAGAAGGTTTGGCTTACCTGCACGAGAACTCGAAAACCAAGATCATTCACCGGGACATCAAGGCTAGTAACATCTTGCTTGACTCAAAGTTCCGAGCTAAAATTGCTGATTTTGGATTGGCTAGATCCTTTGAAGAAGATGTGAGCCACATCAGCACTGCCATTGCCGGAACCTTGGGGTATATGGCGCCAGAGTACTTGGCTCATGGCCAGCTAACAGAAAAGGCTGATGTCTACAGTTTTGGTGTGGTTTTGCTGGAGACCATCACTGGGATACAAAACAGTAGGAGCAAAACCTCGGACTACTTGGAAAGCATAGTAATCATTACATGGAAGCATTTTGAATCGGGAACAGTGGAAGGGATATACGACCCGAACCTGATGGTTGATGAGAAGGAGGGAGGTGGGAGCATAAAAGGGAATATTGAGAGTGGTGCACATAGGACTTCTGTGCACTCAGGAGACTGCATCACTGCGACCCACAATGTCAAAGGTACTGCAGATGCTGATGAAGAAGGAAGACAAACTTCCAGCTCCGACCAACCCGCCTTTCATGGACGAGAGGACAATGGAACTGAACGACACCAGCGACGCCCCGTCCCAATGCTGGAAGAAGGAATTAAACTTCCAGCTCCGACCAACCCGCCTTTCATGGACGAGAGGACAATGGAACTGAACGACACCAGCGACGCCCCGTCCCAGTACAACGTCACGGAAGGTTCTTCCACGGCTGCGAGCCCCCCTTTCGCGCAAACTGTCACCCATTCCGCAGCTTCCCGACCTTCTTCGTCGTCGGCGGCGGCAGCAGCCTCCTTATTCAGAATCAAGCAGACAAACGGAACCCCAGATTCAATGGCGATCCAGCTTGTTTATGCTTGCAAATATGTCCTATTTTCAGTCCTCGCTATTCTTCTGCTACACCTAACTTCGGCTGTGGGAAAGCCAAGAGATCAAACTGTGAAAGTGATTTGCGGGAAAGAAGTAGAGCACAACACCACGGCGTACGTTCCAAATTTTTTTGGTTCAATGGAAAAAGTAAGACAACAAATCACAACTTCGGGATTTGGAACGGCGGGTACAGGAATAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGAAGATCTCTCATCCCACGAATGTGTGCTGTGTCATTCTCAAGCACGTACGGTGCTTCCCCAGTGCTTCCCTTTCAACGGTGGCCGTGCATTCATCGATGGCTGCTTCTTGAGGTTCGAAAACTATAGCTTTTTTGACGAATACAAAGGACCCGAAGACACTGCAGTTTGCGGTAACCTGACCCAAAATGACCCCAACTATAGACGAGCAGCCAGGGATGCGGTGATGCAAGTGGTCAACGGTGCACCAGGCAACAAAGGCTTTGCAAAAGCTCAAGTGGCTGTGCCCGGGATGGCGAAGGATTCTGCCGTGTATGCTCTGGGTCAGTGCTGGAGAAGTTTGGGCCACAGCTCTTGCAGCTCGTGTTTGAAAATTGCTTCTGCCTCGATGCTGCAGCAGTGTTTACCTCGCTTGGAAGGGCGAGCGTTGTACACAGGCTGCTTCATGAGATACTCAAACACAGACTTTCTGAATAAGGACATCAAAGATAGTTCCAAAGGTGGGACAATAACTGCGGGGATCATCATTTCAATTTTGAGTTCTGTTGTTGTTATGATAATCGTAGCGGTGATCGGAGGTTCAGCTGATGTGAAGAAGTTAGCGAGAACTCTTCAAGATAGTAATTTGAACTTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTCGATAACAAGATTGGACAAGGGGGGTTTGGCTCTGTTTATAAGGGAACTCTACCTGATGGAAGAGAGATTGCTGTCAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTTCAATGAAGTCAACATGATCAGCAGTGTCGAACATAAAAATCTGGTTAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATTCCTGCCAAACAAGAGTCTCGATCGCTTCATTTTTGGTGCCAATAACAGCAAAGCTCTTGATTGGGATAAGAGATATAACATCATCATTGGCACGGTTGAAGGTTTAATATATCTACATGAAAATCCAGAGAACAAAATCATACACAGAGATATAAAGGCCAGTAATATCTTGCTCGATCTAAAGCTTCAAGCAAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAGAACAAGAGTCACATTAGCACCGCCATTGCAGGAACTCTAGGATATATGGCTCCCGAGTATCTAGCTTATGGTCAGCTAACAGAAAAGGTCGACGTCTATAGCTTTGGAGTGCTTTTGTTAGAAATAGTTACAGGATTCCAATACAGTGGCATCCAAGTCTCGGGAAATATTGAAAGTCTTGTCACTGCTATGTGGAGACATTTCCAAGCAGGCACGGTTGAGAGGCTATTTGATTCAAATCTAAATCTTCGGAATCACTACAACAAAAAAGTAAAGGACGAGGTATTGAGAGTGGTGCACATAGGGCTCTTATGCATTCAGGAGGTTCCATCTCTTCGACCAACAATGTCGAAGGTACTACGAATGCTGACCATGGAGGAGGAAGAGCACCTTCCTCCACCCACCAAACCGCCTTTCATGGATGAGATGACCATGGAACTTGATGGCTCATGCAAGGACTCGCAATATTGTTCTATTACAGAGGGCTCTTATTCAACTGCCACAGTCAGCCATAGTTCTTTTCATCCAAGATAA 4140 46.64 MRFLSQPTASVWKLPMNTASPLLPTYGFFIIFITALFLLQSTSTLANPRSQTVNILCSTVLEHNTTAFVPNFVATMQIISDQMRTGGFGVALAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYNEYKGPLDRAVCGNTSITTNSLFGQSARQAVGRAVDIAPNNGGYARVEVPVPGTSNLSVYLLAQCWKNLKRSSCTSCLQNASASILKCLPQSEARALNTGCFIRYSSVDFLNREARAARFRGNIIAIVISVVSSIAVLVAGVVIGIYIWNNRYVKMKRKGSNDANKMVKTLNNSSLSFKYSTLEKATECFAEANMLGQGGFGTVYKASLLIGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDRDRGRSLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKFRAKIADFGLARSFEEDVSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETITGIQNSRSKTSDYLESIVIITWKHFESGTVEGIYDPNLMVDEKEGGGSIKGNIESGAHRTSVHSGDCITATHNVKGTADADEEGRQTSSSDQPAFHGREDNGTERHQRRPVPMLEEGIKLPAPTNPPFMDERTMELNDTSDAPSQYNVTEGSSTAASPPFAQTVTHSAASRPSSSSAAAAASLFRIKQTNGTPDSMAIQLVYACKYVLFSVLAILLLHLTSAVGKPRDQTVKVICGKEVEHNTTAYVPNFFGSMEKVRQQITTSGFGTAGTGIGPDASYGLAQCHEDLSSHECVLCHSQARTVLPQCFPFNGGRAFIDGCFLRFENYSFFDEYKGPEDTAVCGNLTQNDPNYRRAARDAVMQVVNGAPGNKGFAKAQVAVPGMAKDSAVYALGQCWRSLGHSSCSSCLKIASASMLQQCLPRLEGRALYTGCFMRYSNTDFLNKDIKDSSKGGTITAGIIISILSSVVVMIIVAVIGGSADVKKLARTLQDSNLNFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLPDGREIAVKRFFFDNRHRAADFFNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFGANNSKALDWDKRYNIIIGTVEGLIYLHENPENKIIHRDIKASNILLDLKLQAKIADFGLARSFQENKSHISTAIAGTLGYMAPEYLAYGQLTEKVDVYSFGVLLLEIVTGFQYSGIQVSGNIESLVTAMWRHFQAGTVERLFDSNLNLRNHYNKKVKDEVLRVVHIGLLCIQEVPSLRPTMSKVLRMLTMEEEEHLPPPTKPPFMDEMTMELDGSCKDSQYCSITEGSYSTATVSHSSFHPR 1379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 119249 126489 - Carg20497-RA Car12g00022 157638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00022 1379 ProSiteProfiles Protein kinase domain profile. 342 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00022 1379 ProSiteProfiles Gnk2-homologous domain profile. 770 871 IPR002902 -
Car12g00022 1379 Pfam Protein kinase domain 1051 1323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00022 1379 Pfam Protein tyrosine and serine/threonine kinase 346 548 IPR001245 GO:0004672|GO:0006468
Car12g00022 1379 ProSitePatterns Protein kinases ATP-binding region signature. 1056 1078 IPR017441 GO:0005524
Car12g00022 1379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Car12g00022 1379 ProSiteProfiles Gnk2-homologous domain profile. 876 983 IPR002902 -
Car12g00022 1379 ProSiteProfiles Gnk2-homologous domain profile. 50 151 IPR002902 -
Car12g00022 1379 ProSiteProfiles Protein kinase domain profile. 1050 1327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00022 1379 MobiDBLite consensus disorder prediction 618 714 - -
Car12g00022 1379 ProSiteProfiles Gnk2-homologous domain profile. 157 262 IPR002902 -
Car12g00022 1379 ProSitePatterns Protein kinases ATP-binding region signature. 348 375 IPR017441 GO:0005524
Car12g00022 1379 MobiDBLite consensus disorder prediction 639 655 - -
Car12g00022 1379 MobiDBLite consensus disorder prediction 680 714 - -
Car12g00022 1379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1171 1183 IPR008271 GO:0004672|GO:0006468
Car12g00022 1379 Pfam Salt stress response/antifungal 787 869 IPR002902 -
Car12g00022 1379 Pfam Salt stress response/antifungal 66 149 IPR002902 -
Car12g00022 1379 Pfam Salt stress response/antifungal 169 258 IPR002902 -
Car12g00022 1379 Pfam Salt stress response/antifungal 891 980 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01145 Car-Chr4:6592258 Car12g00022 Car-Chr12:119249 2.40E-59 dispersed
Car12g00022 Car-Chr12:119249 Car14g00601 Car-Chr14:3346716 7.13E-140 dispersed
Car12g00022 Car-Chr12:119249 Car18g00715 Car-Chr18:8355334 8.67E-141 wgd
Car12g00022 Car-Chr12:119249 Car05g00027 Car-Chr5:149238 1.65E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89212 PF00069 Pkinase 1.20E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00022 - - cmax:111492443 2020.36