Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00030 ATGAGGGACCAAACCTCTGGCTTGCGATTTAACGACTCCTCTTGTTGCTTGAAGCGGAAAAGACCTCCCAAGATTGAGATCCCTAACGTCTTACGAGAGATTCAAGCCGGAAAACTTGAAGGAACCACTCCCCGAACCGATTCCCTCTCCTCCCCTGACTTTGCGGATCATGTAGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGACACTCACAGGATCATTTCTTGCATGAAAGGCCACTTCAATGATGCCTTTTTTGGCGTTTATGATGGCCATGGAGGCAGGAAGGCAGCCAAATTTGTTGCAGAAAATTTGCACAAGAACATACTTGAAGTGGTGGCCAATTGCACGGAATCTGCACAGAAGGAGGAAGCAATTAAAGCTGCTTTCTTGAAAACGGACGGGGACTTCTTGAATCTGGGTTTAGGCAGTGGTGTCTGCTGTGTCACAGCTCTGATACAAGGAGAAGAACTTGTTGTTTCCAATTTGGGAGATTGTAGGGCTGTTCTTTCTAGAGGAGGAGTAGCTGAAGCAGTCACAAAAGACCATAGAGTTGAACAGGAGGATGAAAGGAAACGAATAGAGAACAAGGGTGGATACGTTGAGATTCACAGGGGGGCATGGAGAGTTCATGGAGTTCTTTCTGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGACTGGGTACTGGCAGAGCCTGATTCAAAGGTCCTACTTCTTAGTGAAGACATGGAATTTCTTGTTCTAGCCACTGATGGATTATGGGAAAAGGTTGGGAACCAAGAGACCGTTGATGTCGTGACACGACTGAGGTTGATGGATAAAAGTTTTGGGCTACCAAAATGTTCCTTGAGAAGTACTAGCCATGCCCATTGCTCTGTGAACCCAAGTCCATCAAAACTGCGGAGAGTTTCTTTGGTCACGCAACCGAAAGGAGGGGGGATGGACCAATCTCCGATCTGTGACAAGGCAATGGATAGCTCTGAAGAAGCTGAATATGACTATTCTTGTGAAATTGAAAGTCCTAGAACAAAATCAAGGAGAATATCGTTGGTCAGACATAAAAAGATGAAGACAGAATCTTCACCTAAGGAGAATAATGATAGCTATAGGAAGAGACCCACTTCCAGTAGACTTGTGGCTGCTTGTAAGGAACTTGTAGATCTAGCTCTAAGTAGAGGTAGCCTGGATGACATTACCGTAATAATTGTCGACTTAAGCCACTTTAGGTGCGAGAGTCGGTCTGAGAATGTTCCACAATCAGCTTTCTTGGATTCGTACCAAGCCATGCATGACTCCATCGGAATTCCTGCTTGCTTCTCATATGGGGAGAGGCCAAGTAATGATCCAGCTTCAGTAATCAGGTCAGGTCAGAGTGTGTTTATGTCAGTATATCAAACAAAGATCGTTGGTCAGTGTCGTCTCATCACAGTCACTTGGTGTAAGAATCTGTTACTTCATGGTCTTTCCATCTGTGTTCAAGGACCAGAAGGAAACCAGCAATATCAGTGTAAGGTTGAGATGAAACCATGGTACTTCTGGAGAAAACAAGGTTCTAGGCACTTTGAAGTCGACGGTCGAGCGGTGGATGTATTCTGGGACCTCAAGAGTGCAAAATTCAATGGAGAGACAGAGCCACAGTCGGAATACTACGTGGCCGTTGTCTGTGAAGAAGAAGTTGTTTTACTTATTGGGGATCTCAAGAAAGATGCCTTCAGAAAGACAGGTTGTCGGCCAGCTTTGATTGAACCGACTCTGGTTTCAAAGAAGGAACATGTATTTGGGAAGAAAATGTTCTCCACCAGAATCCAGTTCCATGAGAAAGGCAAGTTCCACACCATCTCAATTGAGTTCATCAACATCAACAATCCCAGTTTTTCTGATTCATTCGATCCAGAACTGGAGATGAGGATCGACGGGCAACCAGCAATCAAAATTAAGCACCTTCACTGGAAGTTCAGAGGCAATGGATCTGTATTAATCAGCAGAACAAGACTAGAAGTTTACTGGGATGTCCATGATTGGCTGTTTGGTTCAGGTTCCAGGTACGGGCTATTCATATTCAGGCCAATGTCATCATGGTCTGAATCTCCATCGTCATCACTTGCATCGACGACATCGCTACCTGCACCATCCTCTTCTTTAACACCAACAGGAATGTCCATTAGAGAAGTGATTTCTAGTTCTGGGGAGGATGAAAATGCAGCGGCAGGAGTGTCATCCAAATTCTGCTTATTTCTGTATGCTTGGAAGATGGAATGA 2271 44.83 MRDQTSGLRFNDSSCCLKRKRPPKIEIPNVLREIQAGKLEGTTPRTDSLSSPDFADHVGVFSVKGKKRFMEDTHRIISCMKGHFNDAFFGVYDGHGGRKAAKFVAENLHKNILEVVANCTESAQKEEAIKAAFLKTDGDFLNLGLGSGVCCVTALIQGEELVVSNLGDCRAVLSRGGVAEAVTKDHRVEQEDERKRIENKGGYVEIHRGAWRVHGVLSVSRSIGDAHLKDWVLAEPDSKVLLLSEDMEFLVLATDGLWEKVGNQETVDVVTRLRLMDKSFGLPKCSLRSTSHAHCSVNPSPSKLRRVSLVTQPKGGGMDQSPICDKAMDSSEEAEYDYSCEIESPRTKSRRISLVRHKKMKTESSPKENNDSYRKRPTSSRLVAACKELVDLALSRGSLDDITVIIVDLSHFRCESRSENVPQSAFLDSYQAMHDSIGIPACFSYGERPSNDPASVIRSGQSVFMSVYQTKIVGQCRLITVTWCKNLLLHGLSICVQGPEGNQQYQCKVEMKPWYFWRKQGSRHFEVDGRAVDVFWDLKSAKFNGETEPQSEYYVAVVCEEEVVLLIGDLKKDAFRKTGCRPALIEPTLVSKKEHVFGKKMFSTRIQFHEKGKFHTISIEFININNPSFSDSFDPELEMRIDGQPAIKIKHLHWKFRGNGSVLISRTRLEVYWDVHDWLFGSGSRYGLFIFRPMSSWSESPSSSLASTTSLPAPSSSLTPTGMSIREVISSSGEDENAAAGVSSKFCLFLYAWKME 756
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 149128 154063 + Carg20490-RA Car12g00030 157646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car12g00030 756 MobiDBLite consensus disorder prediction 358 375 - -
Car12g00030 756 Pfam Protein phosphatase 2C 58 273 IPR001932 -
Car12g00030 756 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Car12g00030 756 ProSiteProfiles PPM-type phosphatase domain profile. 57 409 IPR001932 -
Car12g00030 756 MobiDBLite consensus disorder prediction 351 377 - -
Car12g00030 756 Pfam Plant protein of unknown function (DUF868) 459 754 IPR008586 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01034 Car-Chr4:5923487 Car12g00030 Car-Chr12:149128 7.82E-72 dispersed
Car12g00030 Car-Chr12:149128 Car13g00393 Car-Chr13:6495167 7.30E-76 dispersed
Car12g00030 Car-Chr12:149128 Car05g00035 Car-Chr5:184820 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00030 - - csv:101209288 1205.66