Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00040 ATGGATTATAAAAGCAGCCTTCTTCAGACCCTTCTTCCCCATCACCAAACTCGATCCTCTGTTTTTGCCTTCTATCTCTGCTTCACACAGAACAGAGCGAACACAGCCATGGCAAACCCCATTGTTCTTCTCATAACCTTCGTTCTTCTTCTCCATATGTACTCTGCTTCTTCCTCTCCAGTCGCCGATCCTGCGCAAGTGGTTGAAGAAGTTCTCACGAGCATCAACAATGCAACAAAAAGAAGGAACTTGGGGTTCCTCTCCTGCGGAACTGGAAACCCAATTGATGATTGTTGGAGGTGCGACCCCGATTGGGAGAAGAATCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTTGGGAAGGGAGCCATCGGCGGCAGAAACGGAAAATTCTACATTGTCACTGACCCATCTGACAAGGACGTGGTGAACCCAAAACCAGGAACTCTCCGCCATGCCGTAATCCAAAAAGAACCTTTATGGATCACCTTCAAGCGTGACATGGTCATCAAATTAAAAGCAGAGCTGATCATGAACTCTTTCAAAACCATCGACGGTCGCGGCAGATCAGTCCACATCGCCGGTGGGCCATGCATTACAATTCAGTACGTGACGAACATTATAATCCACGGCATTAACATTCACGACTGCAAGCAAGGAGGGAACATGTACATTAGAGATTCGCCGGACCATTACGGTTGGAGGACTCTGTCGGACGGTGATGGGGTTTCGATATTTGGGGGCAGCCATATTTGGATCGACCATTGTTCGTTGTCGAATTGCCAAGATGGGTTGATTGATGCGATTCGTGGGTCTACGGCTATCACAATTTCAAACAATTATATGACCCACCATAACAAAGTTATGCTTTTGGGACATAGTGATTCGTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGCGAGGGGCTGGTGCAAAGAATGCCACGATGCCGACATGGGTATTTCCATGTGGTGAATAATGACTATACCCATTGGATTATGTACGCCATTGGTGGAAGTGCATCGCCCACAATCAATAGCCAAGGGAACAGATACCTTGCTCCTGATAACCGAGTTAGAAAAGAGGTGACAAAGCGTGAGGCTGCAGCAGAGAGCAAATGGAAGAATTGGAATTGGAAATCAGAGGGAGATTTGATGTTGAATGGAGCGTTCTTCAGGAAGTCCGGTGCCGGAGCGTCGTCTAGCTATGCGAGGGCGTCGAGCTTGAGTGCCAAGCCATCGTCGTTGGTGAGTTCAATGACGGCAGGAGCAGGAGTGCTGAAATGCTCCAAGGGCTCCCCATGCTCTACTTGA 1332 48.27 MDYKSSLLQTLLPHHQTRSSVFAFYLCFTQNRANTAMANPIVLLITFVLLLHMYSASSSPVADPAQVVEEVLTSINNATKRRNLGFLSCGTGNPIDDCWRCDPDWEKNRKRLADCAIGFGKGAIGGRNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELIMNSFKTIDGRGRSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNMYIRDSPDHYGWRTLSDGDGVSIFGGSHIWIDHCSLSNCQDGLIDAIRGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRVRKEVTKREAAAESKWKNWNWKSEGDLMLNGAFFRKSGAGASSSYARASSLSAKPSSLVSSMTAGAGVLKCSKGSPCST 443
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 186828 188349 - Carg20480-RA Car12g00040 157656
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car12g00040 443 Pfam Pectate lyase 202 356 IPR002022 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00040 Car-Chr12:186828 Car13g00617 Car-Chr13:7884129 0 dispersed
Car12g00040 Car-Chr12:186828 Car18g00198 Car-Chr18:1127035 0 wgd
Car12g00040 Car-Chr12:186828 Car05g00044 Car-Chr5:230257 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00040 K01728 - csv:101208076 709.138