Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00041 ATGGCTTCCTTATCTCCTTGTCGCCCAAATTTTATGCTCTCTTCATTTCCGAACCGTGTTCCGACCTCAAATCCTCTATTTCATGCGGTCCAATTCCGAGGTTTATCCCACCACAAGCCCTTCCTTCGCGGTTCCCTTGCCGTTACGAGATTCGGGTTTAAACCCGAGTTCTTGCCTGACCCAGATAACGCCGAGGGCTTTGTGAGGGAGTTGTTCGGCAAAGCTGAGAGCGTTCTGTATACGATAGCCGACGCCGCCGTGTCTGCTTCGCCGGAAGACGTGACCACCGCCAAGCAAACTGAGGATTGGTTTACGGGGATTACCAATTACATGGAGAGCGTCCTTAAAATTCTTGAGAATGGACTTTCTACTCTGCATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACAGTTCTTGTTAAGGCTGCCACATTTCCTTTGTCAAAGAAGCAGGTAGAATCTGCAACGGCAATGCGTTCGTTGCAACCGCAAGTAAAGGCCGTTCAGCAACGTTATGCCGGGGATCAGGAGAGGATTCAAATTGAAACTGCTCGACTCTACAAATTAGCTGGAATAAACCCGTTTGCAGGATGCCTACCTACGTTGGCTACAATCCCCGTATGGATTGGACTATACAGAGCTCTTTCAAATGTGGCCAATGAGGGTCTCCTCACAGAAGGCTTTTTCTGGATACCGTCTCTGGCTGGTCCAACTACGATCGTTTCTCGACAAAGTGGGAGTGGTATCTCTTGGCTCTTTCCATTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCATATCTTGTCTTGCCTGTGTTGCTGGTTGTGTCGCAGTACATCTCGGTTCAGATTATGCAATCGACGCAGAATAATGATCCAAACATGAAGAGTTCTCAAGCCATAACGCAGTTCCTACCGTTGATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCACAGCAGGCATGGCTTCAAAAGTCAGGTGGTGCAAAGACCCCGGACAAACGGTTCATCGATGAAAGCATCAAACAAGAACAAGCCCGAGTCCAGATCCAATCGCCCGAGTTAAAGTCAGTTTCGATGAGCACAGTAGCCAGAGAATCAGAGAAGCCAACAGCAGAAGGGGTAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGGTAGGATAAGACAGCAAAGAGAAGAAGAAAAGAGGAAAGCTGAAGAGGCAGCCAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGCGCAGCTGCTAGATTTGTTGTCAATGGCAGTCTTTCTAGACAGGATGTGGAGGAAGTTCAAAACTCCATGTCCACATCTACTATGCTGCATAGAACCGACGCGGACGACGAGGTTAGCGATACAAGCGAGCATCTGCCAAGTGTAACTCAGGAAGAGAACGTAGTCGAGACGTACACCGATGTGGGCAAGGATGCCAAACTAAATGGAGAGTAA 1530 47.25 MASLSPCRPNFMLSSFPNRVPTSNPLFHAVQFRGLSHHKPFLRGSLAVTRFGFKPEFLPDPDNAEGFVRELFGKAESVLYTIADAAVSASPEDVTTAKQTEDWFTGITNYMESVLKILENGLSTLHVPYAYGFAIILLTVLVKAATFPLSKKQVESATAMRSLQPQVKAVQQRYAGDQERIQIETARLYKLAGINPFAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIVSRQSGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQNNDPNMKSSQAITQFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKSGGAKTPDKRFIDESIKQEQARVQIQSPELKSVSMSTVARESEKPTAEGVKPGERFKQIKEQEGRIRQQREEEKRKAEEAAKLESQTINDSDKSAAARFVVNGSLSRQDVEEVQNSMSTSTMLHRTDADDEVSDTSEHLPSVTQEENVVETYTDVGKDAKLNGE 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 189665 193062 - Carg20479-RA Car12g00041 157657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00041 509 MobiDBLite consensus disorder prediction 453 509 - -
Car12g00041 509 MobiDBLite consensus disorder prediction 389 431 - -
Car12g00041 509 MobiDBLite consensus disorder prediction 377 435 - -
Car12g00041 509 Pfam 60Kd inner membrane protein 131 345 IPR001708 GO:0016021|GO:0032977
Car12g00041 509 Coils Coil 404 432 - -
Car12g00041 509 MobiDBLite consensus disorder prediction 453 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00041 Car-Chr12:189665 Car16g00487 Car-Chr16:3114882 3.05E-09 dispersed
Car01g00538 Car-Chr1:3181000 Car12g00041 Car-Chr12:189665 9.82E-142 transposed
Car12g00041 Car-Chr12:189665 Car05g00045 Car-Chr5:234837 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00041 K03217 - csv:101205346 804.283