Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00045 ATGGAAAATGGCTTCTCTTTGCCTCGAAGCGATGTGTTTCCTGTCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTCAAAATCCTGGAAAAGATGCTCAAAAAGTGCTCTTATGAAGTGACTACATGTTGTCTGGCAAGGGAGGCTCTAAGCCTGCTAAGGGAGAGAAAAGATGGATACGACATCGTAATCAGCGACGTAAACATGCCCGACATGGACGGTTTTAAACTCCTCGAGCATGTAGGATTAGAAATGGACCTACCAGTTATCATGATGTCAGTTGATGGAGAAACAAGCAGAGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAGCCAATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTACTTCGAAAGAAGATTCAAGAGGGAAGAGATATTGAAGGCCATGATGTTTTTGAAGGCCTTCAAATCCTTAGAAATGGATCAGATAGGTATGATGATAGCCAGTTCCTTAGAGTAGAGGAGCTCTTTTCAGTGAGGAAAAGAAAAGATGTTGATAAGTACGAGGAAAAAGAGTTTGGTGAGACATGTTCTACAAAGAAAGCCAGAGTTGTTTGGTCGGTTGATCTGCACCAGAAATTTGTTGAAGCAGTAAACCAGATAGGCTTTGACAAAGTTGGCCCTAAGAAGATTCTTGATCTGATGAATGTCCCATGGCTAACAAGGGAAAATGTAGCTAGCCATTTGCAGAAGTATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGAGATGAAACAGACCGATTCGAGTTTGAAGGATGGAGATGGAAACTTCAGCGTTTGTAGCTCGTTAGGCGTGCCACAAACTGATGTCACGAATAGCAGCTTCAGTTTTTCGGGTGATAACTTTCTTAACAATGTGGATTCCATAGGATGTGAAGCTGATAGGAAAAGGGTTGTTCAAGAACAAACATCAGAGCCAAAAAGAGCTGCTGCTACTGAACTGATAAAGACACGGTGTACCCACATGAAATTCAACAACTCGTTTGCCTCTGTTGAATCTGAAGGCAAGTTAGTAGCATGTTACCCTTGGGTTGAAGCTCCACAGATGAAGCTCAAACAAGAAAGCAAGCCACATCAAGTTCAAATCAACCAACTACCATCGGTTTCGTCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGACAAAGGAAGCTCCATTGAAAGTAAGGACTGTAGCCAACAAATGGTCCATCTAAACCCACCAAAACCTCCAACTGATTCGTTCTCTGGCAAGGCTAAGAGTTTCAATGAGATCAATGACCATTTTGAGCCTATTTCAACTGCTACTGCTCCATTGGGCGTGAAAAACCAGAATGTGATCGATCTTAGCAGCATTTCAACTGATTTAGGAAGTGGGTTTCCTTTTTCAAGCTTTGATGAAGATTTGCAGGGCTATTTGATTCAAGATGGTTGTTACCCAAAGAACCTTGAACAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGGTCCGACTCACCTTTATGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATCCAGTGATAGATGAAGGCCTATTCATCGCATGA 1659 42.07 MENGFSLPRSDVFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVFEGLQILRNGSDRYDDSQFLRVEELFSVRKRKDVDKYEEKEFGETCSTKKARVVWSVDLHQKFVEAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVEMKQTDSSLKDGDGNFSVCSSLGVPQTDVTNSSFSFSGDNFLNNVDSIGCEADRKRVVQEQTSEPKRAAATELIKTRCTHMKFNNSFASVESEGKLVACYPWVEAPQMKLKQESKPHQVQINQLPSVSSISSGRSATEKDKGSSIESKDCSQQMVHLNPPKPPTDSFSGKAKSFNEINDHFEPISTATAPLGVKNQNVIDLSSISTDLGSGFPFSSFDEDLQGYLIQDGCYPKNLEQIIEFPDYGDPGIFTEGPTHLYDAMRFGYEYSYDPTEYPVIDEGLFIA 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 202168 204927 - Carg20475-RA Car12g00045 157661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00045 552 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Car12g00045 552 MobiDBLite consensus disorder prediction 379 436 - -
Car12g00045 552 MobiDBLite consensus disorder prediction 381 406 - -
Car12g00045 552 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Car12g00045 552 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02017 Car-Chr4:15978878 Car12g00045 Car-Chr12:202168 9.59E-35 dispersed
Car05g00053 Car-Chr5:258197 Car12g00045 Car-Chr12:202168 0 dispersed
Car12g00045 Car-Chr12:202168 Car14g01419 Car-Chr14:11919856 1.05E-95 dispersed
Car12g00045 Car-Chr12:202168 Car08g01126 Car-Chr8:7621855 9.41E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4368 PF00072 Response_reg 1.10E-24 CL0304 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00045 - K14491 csv:101204370 905.975