Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00052 ATGTACTTGTCTGATAAGCCTCGACCAATCGATATTTACAAAGAAGAAGGCAGCAGAGATATGATGATCGAGGTGGCTTCTAATGGCGACCATCATATTCAACCTCATCAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCGCCGAAGAAGCGGGCGGAGACTTGGGTTCAGGATGAGACGAGAAGCTTAATTTCACTACGGAGGGGGATGGATGGATTGTTCAATACCTCGAAATCGAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGAGGCTTTGATCGCTCTCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCTAAACACCACGACAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAATGCGCAGTACAAGAGCCCTACGCCGCCCAAGATTGATTCCTACATACAATTCTCAGACAAAGGAATTGAGGATAATGCTCTATCGTTTGGACCTGTCGAAGCTGGTGGCAGGCCCTCACTCAATCTTGAAAGACAGCTGGATCACGATGGGCATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACAGGCATCCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGGTGGGGAAGGTCAGGCATTTGGCGGGAGAGTTATAACAGTCAAGTGGGGAGACTACACAAGAAGAATCGGTGTTGATGGCACCTCAGAAGCCATCAAGGAGGCAATCAAGTCTGCATTTAGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTATCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGTACCCATTCTTGTGTTTGCATTGACTGTTATGATTCTTGTAAACATTATAGCACCAAGCTGCGGATTTTAGGCAAAGTAGTGCATGTAAGAGCAGTTGAACTTCTAATTTCAGGGTTGGCTGTTAAAATCTGCCTCTATGATGAATCTGACCACTTACCAGTACATACTGAAGAAAAAATATTTTACACTGAAGATGAGTACCGAGAATTTTTAGCTCGTCGGGCCTGGACATGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGATCTACGTCCTGGTGCATTATACCGCGGTGTAAGTTGA 1251 46.04 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRRGMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNAQYKSPTPPKIDSYIQFSDKGIEDNALSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGGEGQAFGGRVITVKWGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVIRSLDRDMPLGNYTLHLDEGTHSCVCIDCYDSCKHYSTKLRILGKVVHVRAVELLISGLAVKICLYDESDHLPVHTEEKIFYTEDEYREFLARRAWTCLREFDGYRNIDNMDDLRPGALYRGVS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 223192 226982 + Carg20468-RA Car12g00052 157668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00052 416 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Car12g00052 416 Pfam Myb/SANT-like DNA-binding domain 68 152 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00052 Car-Chr12:223192 Car13g00293 Car-Chr13:5407009 8.15E-11 dispersed
Car12g00052 Car-Chr12:223192 Car05g00058 Car-Chr5:293279 9.71E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4369 PF13837 Myb_DNA-bind_4 1.10E-20 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00052 - - csv:101222888 676.781