Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00061 ATGGATATTACGGAGGTTGAGGAAAGTCTATTTGCAGCACGTGATGCCAAGCTACATGGAGGAATGTGCAAGGCTCTTTCTTCAATATATTGTAAAGCATCATCAATTTTCCCTTCATTGGAAGAAGCACGACCTCGGAGCAAATCTGGTATCCAGGCATTATGCTCGTTGCATGTGGCACTGGAAAAAGCCAAAAATACTCTCCTACATTGTACAGAGAGCAGCAAACTTTATTTGGCTATAACTGGGGACTCTGTCCTGTTGAAGTTTAAGAAGGTAAAATGTGCTCTACAGGATAGCCTTCAACGCGTTGAAGATATTGTTCCACAGTCAATTGGCCATCAGGTTCAGGAGATTATGAAGGAACTGGATAGTACTCAATTTTTCCTAGACCCTTTGGAGAAGCAAGTTGGTGAGGACATTATTGTATTGCTCCAACGAGGACGAACATTTAGCAACACTGTTGACAACAATGAGCTCGAGACTTTTCACCAAGCTGCTATAAGACTTGGAATAAACTCCTCTAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATAGATCGATCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCTGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTCGGGGACAGTGGACCCGGTGGAAATGGACAAGCCTTTGAAAGGCAGCTAACAAAGCTTGGTACTTTTAACATGAAGCCAACAAATCTCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATACGAAAGGATTTGCATAGAGAAGTGGTTAAGTGATGGGCATAACACCTGCCCAAAAACTCAACAGAAACTTTCTCATTTTTCATTGACGCCAAATTACTGTGTAAAGGGCCTGATTGCAAACTGGTGTGAACAGAATGGAGTTCCTGCTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTATCTGAATCAGTGTCTCTAAATTCGTCGCCTGTGGACACAGTTGGTTCTTGTAAGTTGAAAGATGCTAAATTTGATCTGGTTGAAGAAAAGGGCACAACCGAGGAGATCAAAGAAAATGTAGTGGATGACAACTCTGCTGAAGACCAGGAGTCCGTCACAAATATGCTTATTAGATACGAACAGTATTTGAAAGTTTTGAATGAAGAAGCTGACTTGAGGAAAAAGTTGGAAGTTGTGGAGCAAATAAGACTGTTGCTCAAGGATGATGACGAGGCGAGGATTCTTATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTGGAGAGAGCTGTGCAAGAACAAGATGTTAAGGCTCAGGAAAGTGCAGCAATGGCTCTTTTCAACCTTGCAGTCAACAACGATAGGAACAAGGAAATAATGCTGGCAGAAGGTGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAGATTGCCACGGATCTGCAACGGCCCTTTATCTCAACGTCTCCTGTCTGGAAGAAGCCAAATCTATTATCGGCTCAAGTTGTGCAGTCCCGTTCTTGACTCAACTCCTCCACACTGATACTGAAACACTATGCAAACTTGATGCACTTCACACACTTTACAATCTCTCAACCGTGCCCTCAAATATTCCCAACCTGGTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTTGCTGCCCCTCTTGGTCGAACATGGACCGAAAAGTGCATAGCTATCTCCATAAATTTAGCTTCAGATGAATCAGGTATAGATCAAATGGCATCTACTCCAGAACTCATCAGTGGGTTGGCAGCAATATTAGACAATGGCGAATCCATTGAGCAGGAACAAGCAGTTGCTTGTCTCTTGATTCTTTGCAACGGGAGTGAGAGGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATATCTGTGAATGGGACAGCAAGAGGCAAAGAGAAGGCTCAAAAGCTTCTGATGTTGTTCAGGGTGCAACGACAACAGGAGCCACCAGCACCAACACCAACACCGTCACCAACACCGTCACCAACACCAACACCAACACCAACACCAACACCAACACCGTCACGGACACCGTCACGGACACCGTCACCGACACCAGCACGAACACCGGCACCAACACGAACACCGGCACCAACACGGAAACCATCACTGAAACTGACGAAGCGATCGGAGAGTAGCGGGACATCCATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGACAATTACAAGAAAAAAATCAATAAGAGCTTTCAGCTTTTTATGGAAAACCAAAGGCTGTTCAGTGTACCAATGA 2454 44.95 MDITEVEESLFAARDAKLHGGMCKALSSIYCKASSIFPSLEEARPRSKSGIQALCSLHVALEKAKNTLLHCTESSKLYLAITGDSVLLKFKKVKCALQDSLQRVEDIVPQSIGHQVQEIMKELDSTQFFLDPLEKQVGEDIIVLLQRGRTFSNTVDNNELETFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLGDSGPGGNGQAFERQLTKLGTFNMKPTNLRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHFSLTPNYCVKGLIANWCEQNGVPAPDGPPDSLDLNYWRLSESVSLNSSPVDTVGSCKLKDAKFDLVEEKGTTEEIKENVVDDNSAEDQESVTNMLIRYEQYLKVLNEEADLRKKLEVVEQIRLLLKDDDEARILMGANGFVQGLLRYLERAVQEQDVKAQESAAMALFNLAVNNDRNKEIMLAEGVISLLEEMIMNPDCHGSATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHTDTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIRGLQSLLAAPLGRTWTEKCIAISINLASDESGIDQMASTPELISGLAAILDNGESIEQEQAVACLLILCNGSERCSEMVLQEGVIPGLVSISVNGTARGKEKAQKLLMLFRVQRQQEPPAPTPTPSPTPSPTPTPTPTPTPTPSRTPSRTPSPTPARTPAPTRTPAPTRKPSLKLTKRSESSGTSMPVAESKPLCKTITRKKSIRAFSFLWKTKGCSVYQ 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 256711 260504 - Carg20459-RA Car12g00061 157677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00061 817 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Car12g00061 817 MobiDBLite consensus disorder prediction 224 247 - -
Car12g00061 817 MobiDBLite consensus disorder prediction 221 253 - -
Car12g00061 817 MobiDBLite consensus disorder prediction 712 790 - -
Car12g00061 817 MobiDBLite consensus disorder prediction 715 763 - -
Car12g00061 817 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Car12g00061 817 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00061 Car-Chr12:256711 Car16g00655 Car-Chr16:4158012 1.09E-89 dispersed
Car12g00061 Car-Chr12:256711 Car18g00655 Car-Chr18:7816975 0 wgd
Car12g00061 Car-Chr12:256711 Car04g01836 Car-Chr4:10633185 0 wgd
Car12g00061 Car-Chr12:256711 Car05g00070 Car-Chr5:365427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00061 - - cpep:111798982 1476.46