Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00083 ATGGACGGAGGAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTTCCGCCGCCGCAGCATGACCCGGCGGGACACCAGCCACCACCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGCGATTCATTCAGTACAACATCTTTGGGAATATCTTTGAAGTTACGGCTAAGTACAAGCCTCCAATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTTCTCTCAACTCCGAGACGAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGACAACAAGATCGATGCTAAGAGAACTCTTCGCGAGATCAAGCTGCTTCGGCACATGGATCATGAAAACGTTGTTGCAATTAGGGATATCATTCCTCCGCCTCTAAGGGAAACATTTAATGATGTTTACATAGCATATGAGTTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCACTGTCAGTACTTCCTGTACCAGATTCTTCGTGGATTGAAGTACATACATTCAGCAAATGTTCTACACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATATGCGATTTTGGGCTTGCTCGTGTTACTTCTGAAACTGACTTTATGACGGAATATGTGGTTACTAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCTTCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGAGATCATGTGCATCAGTTACGCTTGCTTTTGGAGCTGATAGGCACTCCATCAGAGGCTGATCTTGGTTTCTTGAACGAGAACGCTAAAAGATACATACGACAACTTCCTCACTACCATCGGCAGTCATTCACTGAAAAGTTTCCACATGTTCATCCTTCAGCCATTGATCTGGTGGAGAAGATGCTAGCATTTGATCCTGGACAGAGAATTACCGTTGAAGATGCTCTAGCTCATCCTTATTTGACTTCATTGCACGACATTAGTGACGAGCCTGTGTGCATGACACCCTTCAGCTTCGATTTCGAGCAGCATGCTCTCACTGAGGAACAAATGAAAGAGCTGATCTACCGAGAGGCACTTGCATTTAACCCCGAGTATCATCAACAATAA 1200 45.58 MDGGASQPDDTVMSEAASVPPPQHDPAGHQPPPMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSSLNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPSAIDLVEKMLAFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYHQQ 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 366900 373537 + Carg26693-RA Car12g00083 157699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00083 399 Pfam Protein kinase domain 71 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00083 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Car12g00083 399 MobiDBLite consensus disorder prediction 1 37 - -
Car12g00083 399 Gene3D Phosphorylase Kinase; domain 1 49 388 - -
Car12g00083 399 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00083 399 ProSitePatterns MAP kinase signature. 101 204 IPR003527 GO:0004707|GO:0005524|GO:0006468
Car12g00083 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 397 - -
Car12g00083 399 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Car12g00083 399 Gene3D Transferase(Phosphotransferase) domain 1 150 378 - -
Car12g00083 399 SMART serkin_6 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00083 399 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 397 - -
Car12g00083 399 SUPERFAMILY Protein kinase-like (PK-like) 71 359 IPR011009 -
Car12g00083 399 CDD STKc_TEY_MAPK 59 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00773 Car-Chr8:5057199 Car12g00083 Car-Chr12:366900 0 dispersed
Car12g00083 Car-Chr12:366900 Car15g01126 Car-Chr15:8878926 0 dispersed
Car12g00083 Car-Chr12:366900 Car05g00374 Car-Chr5:2136289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89213 PF00069 Pkinase 1.20E-72 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00083 K14512 - csv:101204301 799.66