Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00090 ATGATTTTGCTTTTACTTTATAAATTTGTAGGTGAAATATTTTGTAGGCGGAATAAGGTAAAAAAGAAGGGGCAAAAGCGAATCCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTGGATCATCTTGAAGATGGCTACCGTTGGAGGAAATATGGTCAAAAGGCTGTCAAAAATAGTCCATTTCCCAGGTGCACCAACAGCAAATGCACCGTGAAGAAAAGGGTAGAACGCTCGTCTGAAGATCCAACGGTTGTGATTACAACTTACGAAGGCCAACACTGTCATCACACCGTTGGATTCCCTCGTGGAGGAGGACTCAACATGGCTCATGAACCTGCTTTTGGGACTCAATTTTCCCCTCATATGGCTCAGTTCTTTTACCCTGAACCTCACCCACCGCCCACAATTACCCCTCCAAATGCTCCCAATTTGCCATCAGCGGCACCGTCCCAAGAACAGCCTCCAAATTCTTCACCCCAAGTGGCTTCGGATGAGGGCTTACTAGGCGATGTTGTGGCGCCAGGCATGCGTAGAAGATGA 546 47.25 MILLLLYKFVGEIFCRRNKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRCTNSKCTVKKRVERSSEDPTVVITTYEGQHCHHTVGFPRGGGLNMAHEPAFGTQFSPHMAQFFYPEPHPPPTITPPNAPNLPSAAPSQEQPPNSSPQVASDEGLLGDVVAPGMRRR 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 398653 400136 - Carg26686-RA Car12g00090 157706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00090 181 ProSiteProfiles WRKY domain profile. 39 100 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car12g00090 181 Pfam WRKY DNA -binding domain 45 97 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car12g00090 181 MobiDBLite consensus disorder prediction 128 151 - -
Car12g00090 181 MobiDBLite consensus disorder prediction 125 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00090 Car-Chr12:398653 Car17g00350 Car-Chr17:2214403 1.18E-46 dispersed
Car12g00090 Car-Chr12:398653 Car05g00383 Car-Chr5:2195877 4.97E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4371 PF03106 WRKY 1.50E-18 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00090 - - mcha:111004648 238.424