Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00100 ATGCAGAAGGATATGAACAATATTGGGGTAAAGAAGAGAGGCCATGGGAATCGATCTTGGATAAAGATTGATCAGGAAGGGAACTCAGAGGTTTTGGAGCTTGAGAAGGCTACTATAATGAGGCATTGTTCTTTACCTTCAAGAGATATGCGACTTTTGGATCCACTCTTCCTTTGCCCGTCCACAATTCTCGGGAGGGAGAAGGCGATCGTTGTCAGTCTCGAGCAAATTCGGTGTATAATCACAGCTGATGAGGTGATTCTGATGAACTCCTTAGATGGGTGTGCTGCTCACTACAAGGCAGAGCTGTGCAAGCGTCTCCATGCAAGTAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGTTCATTTCTTGACACTCAGATGAAGGGGATGGAAATCGAGATATACCCTCTACTGGATGCTTTAGCGTCTTCAATAAACACGCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGTCCTTGACTCAACAAGTGCAAAAGGTTCGTGATGAAGTCGAGCATCTGATGGACGATGATGGGGATATGGCAGAGATGTTTCTGACAGAAAAGAAACAAAGATTGGAAGCGAACATCCGAAGTAACTTGTATCTCGAAACTAGTTTCTTCGGGAAACCAAAATCTGCTCCTGTTTCACCAGTGGGTTCTACCAATGGATCTTATAAATTACAAAGGGCTTTTAGCAGTATTGTAAACTCGAGCAGCTTGATGAGTTCATCAAACGGTGGTGATAACGTCGAACAATTGGAGATGCTGCTCGAGGCGTACTTCGTGGTCATTGACGACATGCTTAGTAAATTGTTATCGCTCAAAGAATCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTCCAGGTGCTTTTCACTGCAGCTACGTTCTTGGCTACGATGTTTGCGGCGTTAACTGCAGTTTTCGGCATGAATTTTTCCGACGATGTCTTCGAGCATCCGACTTCTTTCCAGTGGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTTTATCTCTTTTCTATTCTATTTTAGGTACAAGAAAATCTTCCCATTGTAA 1146 43.11 MQKDMNNIGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRHCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITADEVILMNSLDGCAAHYKAELCKRLHASKDQSDDLPFEFRALELALELTCSFLDTQMKGMEIEIYPLLDALASSINTLNLERVRRFKGNLLSLTQQVQKVRDEVEHLMDDDGDMAEMFLTEKKQRLEANIRSNLYLETSFFGKPKSAPVSPVGSTNGSYKLQRAFSSIVNSSSLMSSSNGGDNVEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQVLFTAATFLATMFAALTAVFGMNFSDDVFEHPTSFQWIVYLTLIACGLVFISFLFYFRYKKIFPL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 537639 542549 - Carg20585-RA Car12g00100 157716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00100 381 Coils Coil 165 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00100 K16075 MRS2, MFM1; magnesium transporter - csv:101220835 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00100 Car-Chr12:537639 Car14g00950 Car-Chr14:5749064 6.70E-145 dispersed
Car12g00100 Car-Chr12:537639 Car01g00165 Car-Chr1:864890 9.26E-148 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00950 CST 1 447 MRS2 Gene Family AT1G16010 84.1 3.4e-205 711.4
Car01g00165 CST 1 448 MRS2 Gene Family AT1G16010 83.5 3.2e-203 704.9
Car12g00100 . 8 381 MRS2 Gene Family AT1G16010 53.7 8.4e-111 397.9
Car08g00995 CST 1 358 MRS2 Gene Family AT5G64560 79.3 9.6e-156 547.0
Car17g00166 CST 1 366 MRS2 Gene Family AT5G64560 78.8 9.6e-156 547.0
Car19g00047 . 1 373 MRS2 Gene Family AT5G64560 69.0 1.8e-130 463.0
Car11g01150 CST 39 498 MRS2 Gene Family AT3G19640 64.6 3.8e-149 525.4
Car19g00399 CST 14 421 MRS2 Gene Family AT3G19640 51.0 8.3e-112 401.4
Car04g00508 . 1 458 MRS2 Gene Family AT3G58970 62.5 5.7e-144 508.1
Car16g00352 . 1 441 MRS2 Gene Family AT3G58970 63.9 2.9e-140 495.7
Car12g00100 . 9 381 MRS2 Gene Family AT2G03620 66.3 9.7e-133 470.7
Car14g00950 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.2e-113 406.4
Car01g00165 CST 13 448 MRS2 Gene Family AT2G03620 52.9 1.5e-112 403.7
Car04g00508 . 63 457 MRS2 Gene Family AT4G28580 50.3 3.1e-91 332.8
Car16g00352 . 56 440 MRS2 Gene Family AT4G28580 50.4 1.5e-90 330.5
Car08g00995 CST 1 320 MRS2 Gene Family AT5G09690 77.5 9.4e-128 453.8
Car17g00166 CST 1 328 MRS2 Gene Family AT5G09690 74.3 1.5e-125 446.4
Car19g00047 . 1 335 MRS2 Gene Family AT5G09690 65.5 1.3e-108 390.2
Car01g00165 CST 40 384 MRS2 Gene Family AT5G09690 50.1 3.1e-78 289.3
Car14g00950 CST 40 383 MRS2 Gene Family AT5G09690 50.6 4.0e-78 288.9
Car08g00995 CST 23 280 MRS2 Gene Family AT5G09720 70.1 1.2e-89 327.0
Car17g00166 CST 23 288 MRS2 Gene Family AT5G09720 66.4 1.6e-86 316.6
Car19g00047 . 37 295 MRS2 Gene Family AT5G09720 61.7 3.8e-75 278.9
Car14g00950 CST 1 447 MRS2 Gene Family AT1G80900 82.6 7.4e-200 693.7
Car01g00165 CST 1 448 MRS2 Gene Family AT1G80900 81.7 3.4e-197 684.9
Car12g00100 . 5 381 MRS2 Gene Family AT1G80900 54.1 1.3e-108 390.6
Car13g00204 . 3 268 MRS2 Gene Family AT5G22830 62.5 7.0e-76 282.0
Car01g01007 . 114 257 MRS2 Gene Family AT5G22830 80.6 5.4e-60 229.2
Car13g00205 . 114 235 MRS2 Gene Family AT5G22830 79.5 2.5e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00100 Car_Chr12 FPKM 24.049208 27.412718 26.443203 26.136789 37.940308 35.320465 38.657532 31.909115 31.890669 33.826149