Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00105 ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTAACCTTCACTAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGGCATGTCTCGATTCGAATCTCTAACCTTTTTTGCTCGGAGCGTTCGTGTAGCTCCGTGCTTGATTTGATCTGTTTATGTCGAACTCGAGACGGGTTCTTTTCGTTAACCAATTGCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGATGGTCTGCAGCATTCACAGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGGTAAAATTAATGCTCGAGTTCAACGAGCGGAGGTAG 579 44.73 MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSSSRHVSIRISNLFCSERSCSSVLDLICLCRTRDGFFSLTNCSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVDGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFTKVKLMLEFNERR 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 565386 566225 + Carg20580-RA Car12g00105 157721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00105 192 Pfam K-box region 124 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car12g00105 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car12g00105 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car12g00105 192 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car12g00105 192 ProSiteProfiles K-box domain profile. 126 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00105 Car-Chr12:565386 Car14g01026 Car-Chr14:8791655 5.86E-56 dispersed
Car12g00105 Car-Chr12:565386 Car12g00107 Car-Chr12:570579 1.29E-42 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4372 PF01486 K-box 1.10E-17 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00105 K09264 - csv:101220998 191.43