Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00107 ATGGGAAGAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTATGGAGAAAATACTCGAACGATATGAGCGATATTCGTATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTTGAGTATTATAGACTCAAATCGAGAGTCGAACTCTTACAAAGAAACAACAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTCAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGTTCGTTCGAGGAAAAACCAACTCATGCATGATTCCATCTCTGCTCTTCAGAGAAAGGAACGAGCAATTCAGGAACAAAACGCTCTCCTAGCAAAGCAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCCTATTCCCATCAGCTCCTCACCCGTCTCTAAACATCGGGCTTGCGAGCTTTGATGGTCACCTGTGA 672 43.15 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMHDSISALQRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 570579 574963 + Carg20578-RA Car12g00107 157723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00107 223 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 201 - -
Car12g00107 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Car12g00107 223 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Car12g00107 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Car12g00107 223 Pfam K-box region 85 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car12g00107 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car12g00107 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car12g00107 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car12g00107 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car12g00107 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car12g00107 223 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Car12g00107 223 Coils Coil 127 147 - -
Car12g00107 223 Coils Coil 153 176 - -
Car12g00107 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car12g00107 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car12g00107 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00107 Car-Chr12:570579 Car18g00016 Car-Chr18:72368 2.23E-93 dispersed
Car12g00105 Car-Chr12:565386 Car12g00107 Car-Chr12:570579 1.29E-42 proximal
Car15g00885 Car-Chr15:5275713 Car12g00107 Car-Chr12:570579 1.24E-68 transposed
Car12g00107 Car-Chr12:570579 Car05g00402 Car-Chr5:2292789 2.52E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4373 PF01486 K-box 7.10E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00107 K09264 - csv:101219414 385.571