Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00114 ATGAGAACGGCGAAAAGCATTCAGGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGACCTGCTTCTACTTACAACGCAAACAGTAGCATCGGAAACAGCAAAGATGGGAAGAACAATGATAAGGCTAATGCCATAAGGTCGAAGCACTCAGTCACGGAACAGCGCAGAAGAAGCAAGATTAATGAGAGATTCCAGATTTTGAGAGATCTCATACCTCACAGCGACCAAAAGAGAGATACCGTATCGTTCTTACTGGAGGTGATTGAGTATGTACAGTATTTACAGGAAAAGGTGCAGAAATACGAGGGTTCATATCAGAATTGGAGTGGGGAACTTACTAAGTTGATACCATGGAGAAATAGTCATTGGCGTATGCCAACTTTTGTTGGCCATCCCGAGTCTGTAAAAAATGGTTCTGCTTCAGGACCTACGTGTTCGGGGAAGTTTGATGACAACAACATTTCAATTTCACCAGCCATGCTTGCGAGCTCACAGAATCCTCTCGAGTCCCACGCAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATACACATGCTTCTATCCGTAGTGATGGTGTTCATGATCAATCTCTCCACGTTCCAATTTCTGATGCACAGACAACAGAGTGTCCCATCACCAACAATGCATCAAGCCAACCGGAGGAGATGAGCATTCAAGGGGGGACAATAAGCGTTTCGAGTCTTTATTCGGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCGAATAAGCGAACGCCATGCGGAACCCCTATTTATAAGGAAACTGGGAATCCTCCCTCCGGCCACCCATCAACGGCACATGAAGGGGACCTGGACAGTGAAGACGACTCAGATCAAGTGAAAAAGCGGCGTAGGACATGA 999 46.15 MRTAKSIQEDEEYEEDELVAKREGPASTYNANSSIGNSKDGKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTVSFLLEVIEYVQYLQEKVQKYEGSYQNWSGELTKLIPWRNSHWRMPTFVGHPESVKNGSASGPTCSGKFDDNNISISPAMLASSQNPLESHAGRDILQDADITNKVPLPMSLEGNTHASIRSDGVHDQSLHVPISDAQTTECPITNNASSQPEEMSIQGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKRTPCGTPIYKETGNPPSGHPSTAHEGDLDSEDDSDQVKKRRRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 609322 612181 - Carg20571-RA Car12g00114 157730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00114 332 MobiDBLite consensus disorder prediction 1 62 - -
Car12g00114 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Car12g00114 332 MobiDBLite consensus disorder prediction 26 43 - -
Car12g00114 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Car12g00114 332 MobiDBLite consensus disorder prediction 313 332 - -
Car12g00114 332 MobiDBLite consensus disorder prediction 44 62 - -
Car12g00114 332 MobiDBLite consensus disorder prediction 288 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00114 Car-Chr12:609322 Car14g01021 Car-Chr14:8732125 4.33E-60 dispersed
Car12g00114 Car-Chr12:609322 Car05g00407 Car-Chr5:2314773 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4374 PF00010 HLH 3.20E-13 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00114 - - mcha:111004954 554.673