Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00121 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGACGAAAAAAGTCGGAGGTCTAACGATCGGGCCCTAACACTTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGTCGGTTAGCTCAAAATCGTGAGGCTGCTAGGAAAAGTCGATTGAGGAAGAAAGCTTATGTTCAACAACTAGAGAGCAGTCGTTTAAAGCTGACACAACTCGAGCAGGAGCTTCAACGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACCCATTCAATGAGTGGCAATGGAGCCATGGCATTCGACGTAGAATATGCTCGATGGCTTGAAGATCACAACCGTCAAATGAACGAATTGAGATCCGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTAGTCGATGGCATCTTGGTTCATTACGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCGAAGGCTGACGTTTTCCATTTGTTATCAGGCATGTGGAAAACACCTGCCGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAGTCATCACAGCAAGCAGAAGATGCTTTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCCGAGACGTTGTCGAGTGGATCTCTCGGCTCCTCCAGTTCGTCGGGGAACGTTGCAAACTACATGGGTCAGATGGCTATGGCGATGGGTAAACTCGGGACGCTCGAGGGTTTTATACGCCAAGCCGACAATCTGCGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCGTACATGACTACTTCTCCAGACTACGAGCTCTTAGTTCGCTGTGGCTTGCTCGGCCCCGAGAGTAA 1002 48.9 MATEGSPRTDISTDGDTDEKSRRSNDRALTLVMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQMNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAVHDYFSRLRALSSLWLARPRE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 640069 647183 - Carg20564-RA Car12g00121 157737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00121 333 PANTHER TRANSCRIPTION FACTOR TGA9 4 333 - -
Car12g00121 333 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 4 333 - -
Car12g00121 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700|GO:0006355
Car12g00121 333 SMART brlzneu 44 107 IPR004827 GO:0003700|GO:0006355
Car12g00121 333 Coils Coil 67 94 - -
Car12g00121 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700|GO:0006355
Car12g00121 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700|GO:0006355
Car12g00121 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700|GO:0006355
Car12g00121 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351|GO:0043565
Car12g00121 333 Gene3D - 47 99 - -
Car12g00121 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351|GO:0043565
Car12g00121 333 Coils Coil 124 144 - -
Car12g00121 333 MobiDBLite consensus disorder prediction 11 26 - -
Car12g00121 333 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01398 Car-Chr4:8104388 Car12g00121 Car-Chr12:640069 0 dispersed
Car12g00121 Car-Chr12:640069 Car14g00465 Car-Chr14:2438490 0 dispersed
Car16g00700 Car-Chr16:4450520 Car12g00121 Car-Chr12:640069 4.97E-104 dispersed
Car18g00783 Car-Chr18:8834948 Car12g00121 Car-Chr12:640069 8.99E-87 dispersed
Car18g00784 Car-Chr18:8837146 Car12g00121 Car-Chr12:640069 2.97E-54 dispersed
Car20g00148 Car-Chr20:809734 Car12g00121 Car-Chr12:640069 2.50E-104 transposed
Car12g00121 Car-Chr12:640069 Car04g00736 Car-Chr4:4269395 8.57E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4375 PF14144 DOG1 6.90E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00121 K14431 - csv:101213210 583.178