Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00132 ATGGGAATTTTCAAAGTGGAGAGCGTTAAGTTTGAGACTCCTTTTATGTCTGAACGGGCCACTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGTACAGCTGCGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCCTGGTGGTCATAGTAACAGCCCGCGGAATATTGGTGCCTCAAACCGTGACGATGCCTTCTATAGGTATAAGATGCCTAGGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATTAAGACCAATGTGGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGGCCTGCTTCTTACACTACCAAGTACTTTGGATGTGAGCTTGGTGCACAATCCAAATTCGATGAGAAAACTGGGACTTCTCTTGTAAATGGTGCACACGATACAGCCAAGCTTGCTGGTCTGCTCGAAAACTTTATCAAGAAGTATGTTCAATGCTACGGATGTGGTAACCCCGAAACTGAGATTATCATCACGAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTTATATCTGATGTTGACATGAGGGATAAAATCACAACATTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCTATGAGGCGGGCTGAGAAGGAAAGACTTAAGGAGGGCGAGGCTGCTGATGAGGAGCAGAAGAAACTAAAGAAGGATTCGGTGAAGAAGAAAAGCACGAGTGGTAATTCAAAGGAAACTGTTACTAAAGTGCCAAGCAAGAAGAAGAATAATGGCTCGGATGACGATCATTCCCCAGTTCCTATCCATGCTAGTGGTAAGGACGAAGTAGTTGATGATGATGATGACGATGACGATGTGCAGTGGCAAACGGACACATCTTTAGAGGCAGCTAAGCAGCGTATTCAGGAGCAGTTGAGTGCGGTCACTGCTGATATGGTCATGCTGTCTACCGAAGAAACTACGTCGTCTAAAAAGCCCTCTGAACATGAGAAGTCTTCGATCAACGGAAACAAGAACGGAAATGGAGTGTCTCCCCATGTTGCTCTTGTCAACGAGATCAAAGATTATTTGAAGAAAGGTTCCTCCGCTGCCAACCTCAAATCATTTTTGGAATCGCTTTCTGGAACTCCCCAGGAGATCGTGAATGCCTTAGTTGAGGCTCTTTTTGATGGCGTTGGAAAAGGCTTCTCAAAGGAGGTGATGAAGAAGAAGAACTTCTTGGCTGCAGCTGTTGCTCTGGAGGGATCACAGATAGCTCTATTGCGTGCCATTGAATCTTTCTGTCTCAACACGAGTTCGGAGGCTGCTAAGGAGGTTGCTCTGGTTCTGAAATCGCTATACGACAGCAACCTGATTGAGGAGGAATTTGTATTAGAGTGGTACCAGAGGGGCGTGGTTGGTGCTAACAAAAGTTCTCCAATCTGGAATCATGTAAAGCCGTTCATCGAATGGCTCCAGAACGCCGAGTCCGAGACCGAAGAAGAGTAA 1518 45.19 MGIFKVESVKFETPFMSERATLFLSSIGLLGEYCPTSRKKYSCAETIGCMHLELPGGHSNSPRNIGASNRDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKITTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKDSVKKKSTSGNSKETVTKVPSKKKNNGSDDDHSPVPIHASGKDEVVDDDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTEETTSSKKPSEHEKSSINGNKNGNGVSPHVALVNEIKDYLKKGSSAANLKSFLESLSGTPQEIVNALVEALFDGVGKGFSKEVMKKKNFLAAAVALEGSQIALLRAIESFCLNTSSEAAKEVALVLKSLYDSNLIEEEFVLEWYQRGVVGANKSSPIWNHVKPFIEWLQNAESETEEE 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 754737 756944 - Carg20553-RA Car12g00132 157748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00132 505 MobiDBLite consensus disorder prediction 207 249 - -
Car12g00132 505 ProSiteProfiles W2 domain profile. 349 505 IPR003307 GO:0005515
Car12g00132 505 Coils Coil 218 238 - -
Car12g00132 505 Pfam Domain found in IF2B/IF5 70 186 IPR002735 GO:0003743|GO:0006413
Car12g00132 505 MobiDBLite consensus disorder prediction 202 297 - -
Car12g00132 505 MobiDBLite consensus disorder prediction 326 353 - -
Car12g00132 505 Pfam eIF4-gamma/eIF5/eIF2-epsilon 427 505 IPR003307 GO:0005515
Car12g00132 505 MobiDBLite consensus disorder prediction 258 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00132 Car-Chr12:754737 Car14g01531 Car-Chr14:12596085 4.37E-07 dispersed
Car12g00132 Car-Chr12:754737 Car05g00430 Car-Chr5:2466510 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00132 K03262 - csv:101210873 714.916