Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00136 AAGCCAGAATTTACGGCCGTCATTCAACGCCGAGCCGGGAACGGCCGGTTCAAAGAAACCGGTGGTTTCGCTGAAAGCCCACGGGGTGTCCCCACCTGTTCACTCCACGTCACCACTCCGCTTCCGTTCACTGAGCCAACTCAGTCCCCGTTCCGTCCCGTCCCGTCCCGTTCTGTTTCCGCTATAAAAGCAACCGCTCTGCTGATGGAGCATTTTCAGAATGACGATCTTGCTGTGAATGATTTTGACGATGGTGGATTTTTCTCTGATGACGAGTTCCATACTGATCAGAATATTGAGCATATAGACTCCGACTTCGAAGACGGCATGGATACAAGCACGCCGAAGACGGATACCTCTGCTTTCGACGCTAGGAATGGGAAAGATATCCAGGGAATACCTTGGGAGAGGTTCGCCTTTACCAGAGATAATTATCGGGAAAAACGTTTGAGCCAGTACAAGAACTATGAGAGTCTGTCACGCTCTCGTGTGGAACTGGAAAAGGAATGCTTGCAAGTGGAGAAGGGGAATAATTTTTATGACTTCCAGTTCAATACGAGGCTTGTTAAATCAACCATTGTTCATTTTCAGTTAGTTATTCATCGTAGAGCTTATTTTTTCCGAGTTATGCAAGTTTCCCAAGTCATATTTTCTGGAATGGCAATGAATGCTATTTCTGCTATTTCAGCCTTTAAAGCAGTGGAAGTTATATCTGAGCAGCTGCCAGGACGTTGTTATATGCTAAGAAATCTCTTGTGGGCAACTTCTAAGCATGATGTATACCTTATGCAAAACTACTCAGTAATGCACTGGTCTCCATTGCTTCGGAGAGGCAAAGAAGTACTCAATGTGGCTAAACAAATTGTTCCCACCGTGAAACGCCCTGGAGTCTCATCCCAGTCACTGTCTAGAGTTCAGATAAGTGCAATGTCAGTTAAGGAGAACTTGATTGTGGCTGGTGGTTTCCAAGGGGAACTAATTTGCAAGTACTTGAATCATCCTGGAGTTGCATTTTGCACCAAAATGACAACTGAAGAAAATGCAATCACAAATGCTGTTGATATATTTCATAATCCCAATGGTGCAATGAGGATCGTCACAGGAAATAATGATGCAAAAGTTAGGATTTATGATGCCAAGACTTTTGCTTGCCTTAACGGCTTCACGTTTGGCTGGTCCGTAAATAACACCTCTGTTAGTCCTGATGGGAGGATGCTTGCAGTCCTGGGGGATACTACAGAGTGCCTGCTTGCAGATGCCAACTCTGGCAAGGTGATTGAGAGCCTCAAGGGGCACTTAGATTACTCTTTTGCTTCTGCCTGGCACCCTGATGGAAACATTTTGGCCACTGGGAACCAAGACACCACCTGCAGGCTTTGGGACGTAAGGAATACGTCCAAGTCCCTAGCTGTGCTCAAGGGAAGAATGGGAGCAATCAGATGCGTCAAATTCAGTTTGGATGGTAAATTCCTGTCAATGGCCGAGCCTGCAGATTTCGTCCATATCTATGAAAGCCGCACAGGTTATGAACAAGCACAAGAAATCGATCTGTTTGGGGAAATTGCTGGGATCTCCTTTAGTCCCGACACCGAAGCTCTGTTTGTTGGCGTTGCCGATCGAACCTATGGTAGTGTATTGGAGTTTAACAAACGACACCATAATAAGTACGTAGATTCCATCTTCTAG 1686 45.67 KPEFTAVIQRRAGNGRFKETGGFAESPRGVPTCSLHVTTPLPFTEPTQSPFRPVPSRSVSAIKATALLMEHFQNDDLAVNDFDDGGFFSDDEFHTDQNIEHIDSDFEDGMDTSTPKTDTSAFDARNGKDIQGIPWERFAFTRDNYREKRLSQYKNYESLSRSRVELEKECLQVEKGNNFYDFQFNTRLVKSTIVHFQLVIHRRAYFFRVMQVSQVIFSGMAMNAISAISAFKAVEVISEQLPGRCYMLRNLLWATSKHDVYLMQNYSVMHWSPLLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISAMSVKENLIVAGGFQGELICKYLNHPGVAFCTKMTTEENAITNAVDIFHNPNGAMRIVTGNNDAKVRIYDAKTFACLNGFTFGWSVNNTSVSPDGRMLAVLGDTTECLLADANSGKVIESLKGHLDYSFASAWHPDGNILATGNQDTTCRLWDVRNTSKSLAVLKGRMGAIRCVKFSLDGKFLSMAEPADFVHIYESRTGYEQAQEIDLFGEIAGISFSPDTEALFVGVADRTYGSVLEFNKRHHNKYVDSIF 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 777707 783321 + Carg20549-RA Car12g00136 157752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00136 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 429 464 - -
Car12g00136 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 429 470 IPR001680 GO:0005515
Car12g00136 561 Pfam WD domain, G-beta repeat 424 461 IPR001680 GO:0005515
Car12g00136 561 ProSitePatterns Trp-Asp (WD) repeats signature. 448 462 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00136 - - - csv:101222353 783.097
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00436 Car12g00136 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01186 Car-Chr4:6807301 Car12g00136 Car-Chr12:777707 0 dispersed
Car09g00580 Car-Chr9:3287752 Car12g00136 Car-Chr12:777707 0 dispersed
Car12g00136 Car-Chr12:777707 Car16g00914 Car-Chr16:7491764 9.73E-164 dispersed
Car12g00136 Car-Chr12:777707 Car03g00788 Car-Chr3:6546732 1.51E-06 wgd
Car12g00136 Car-Chr12:777707 Car05g00436 Car-Chr5:2496941 1.34E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00136 Car_Chr12 FPKM 0.0 0.0 0.770295 0.748919 1.190578 1.097815 0.0 0.598657 0.642868 0.0