Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00142 TCTTCTTCGCTTCCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTGCAATTCTTCCCAATTTGTTTCTTCTTCTTCTTCTTCTTCTTCAATGGACAGAGCTACTCCTGTTCGGAAGCCTCACACCTCTACTGCAGATCTGCTCACTTGGCCGGAAGTTCCGCCGGCTGATTCCTCTGCGCTTTCTTCTTCTGCTTCTCGCTCTGCTCCGAGGTCTCATCAGCCCTCCCCTGGGATTAGTAAGGTCGTCTTTGGAGGTCAGGTCACGGATGAGGAGGTTGAGAGCTTGAACAAAAGGAAACCCTGTTCTGGATATAAAATGAAGGAGATGACTGGCAGTGGCATTTTTGTTGCAAACGAAGAAGATGATGAACTAGAATCTGGAAGCGCCAACCCTTCACAGAATAAAACAGGAATACGTATGTACCAGCAAGCCTTGGCTGGGATTAGTCATATTTCATTCGGTGAAGAAGGAAGTGTTTCTCCTAAAAAACCAACTACTCTACCCGAGGTTGCGAAGCAGCGTGAGCTGAGCGGGAACCTAGAAAGCGATGCCGATGCAATGTTGAAGAAGCAGCTTTCTGATGCTAAATGCAAGGAGCTTAGTGGACATGATATATTCGCGCCTCCTCCTGAGATCTTACCCCGACCAACAACTGCACGCACTTTGGATTTAAAAGGAAGCATTGAGATTGGGGAGCCTGATAATGTAAGTAGTACTCTTCTGATCAAGTAA 738 46.88 SSSLPFLSLSLSLSLLCNSSQFVSSSSSSSSMDRATPVRKPHTSTADLLTWPEVPPADSSALSSSASRSAPRSHQPSPGISKVVFGGQVTDEEVESLNKRKPCSGYKMKEMTGSGIFVANEEDDELESGSANPSQNKTGIRMYQQALAGISHISFGEEGSVSPKKPTTLPEVAKQRELSGNLESDADAMLKKQLSDAKCKELSGHDIFAPPPEILPRPTTARTLDLKGSIEIGEPDNVSSTLLIK 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 808341 810110 - Carg20543-RA Car12g00142 157758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00142 245 MobiDBLite consensus disorder prediction 22 86 - -
Car12g00142 245 MobiDBLite consensus disorder prediction 22 38 - -
Car12g00142 245 Pfam Protein of unknown function (DUF4057) 34 237 IPR025131 -
Car12g00142 245 MobiDBLite consensus disorder prediction 57 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00142 - - - csv:101215119 374.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00443 Car12g00142 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00734 Car-Chr3:6291665 Car12g00142 Car-Chr12:808341 1.27E-71 dispersed
Car07g00481 Car-Chr7:2403112 Car12g00142 Car-Chr12:808341 5.90E-66 dispersed
Car12g00142 Car-Chr12:808341 Car05g00443 Car-Chr5:2538868 6.62E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g397 . Blo12g00704 . Bda03g00493 Bpe02g00102 Bpe04g00449 . Bma01g02617 Cmo05g00519 Cmo12g00118 . . . Car12g00142 Sed04g0138 . Cpe07g00129 Bhi04g00751 Tan02g2382 Cmetu03g0542 . Hepe10g0507 . Lcy13g1569 Cla08g01103 Cam08g1556 Cec08g1129 Cco08g1256 Clacu08g1258 . Cre08g1040 Cone6ag1563 Cone9ag1483 . . . . . Cme03g01516 . . Bda11g00761 . . . . . . . . Cma12g00153 Cma05g00496 Car05g00443 . Cpe11g00434 . . . . . . . . . . . . . . . Lsi08g00959 . Chy03g01025 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004555 2 1 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00142 Car_Chr12 FPKM 26.876499 32.077782 30.117971 32.831249 26.691433 24.819643 25.954464 31.581341 28.179258 33.241348