Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00143 ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTAGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAGTAGAAGCCGGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCGCCTCAGAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGA 849 48.88 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 814165 818045 - Carg20542-RA Car12g00143 157759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00143 282 MobiDBLite consensus disorder prediction 134 282 - -
Car12g00143 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 126 IPR000504 GO:0003723
Car12g00143 282 MobiDBLite consensus disorder prediction 155 282 - -
Car12g00143 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 78 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00143 K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8 - csv:101216322 304.293
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00445 Car12g00143 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01188 Car-Chr11:9636290 Car12g00143 Car-Chr12:814165 3.51E-55 dispersed
Car12g00143 Car-Chr12:814165 Car19g00207 Car-Chr19:2009616 2.32E-58 dispersed
Car05g00445 Car-Chr5:2546710 Car12g00143 Car-Chr12:814165 1.18E-51 transposed
Car12g00143 Car-Chr12:814165 Car05g00444 Car-Chr5:2542575 5.57E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g401 . Blo12g00705 . Bda03g00492 Bpe02g00103 Bpe04g00448 . Bma01g02615 Cmo05g00520 Cmo12g00119 . . . Car12g00143 Sed04g0139 . Cpe07g00130 Bhi04g00752 Tan02g2384 Cmetu03g0980 . Hepe10g0506 . Lcy13g1568 Cla08g01104 Cam08g1557 Cec08g1130 Cco08g1257 Clacu08g1259 . Cre08g1041 . . Cone17ag1223 Cone20ag0501 . . . Cme03g01517 . Blo18g00134 Bda11g00763 . . . . . . . . Cma12g00154 Cma05g00497 Car05g00445 . Cpe11g00435 . . . . . . . . . . . . . . . Lsi08g00960 . Chy03g01026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001751 2 2 2 1 2 2 4 2 2 1 2 2 3 2 2 2 2 4 4 2 2 2 2 2 2 2 1 4 5 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00143 Car_Chr12 FPKM 3.583744 2.106057 5.421038 3.695392 33.738747 37.961128 35.587494 28.181049 27.215603 25.870804