Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00154 ATGGCTACCGCCCCCTCTCTTCGCGAGGAGAATGTTTACATGGCCAAGCTTGCTGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCTATCGACAAGGAGGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCTCGTAGGGCCTCTTGGCGTATTATTTCCTCCATCGAGCAGAAGGAGGAGAGCCGAGGTAATGATCACCATGTCTCTGTGATCCGTGACTACAGATCCAAAATCGAGAGCGAACTCTCTAATATCTGCGATGGAATTCTCAAACTCCTCGATTCCAGACTCATTCCCTCCGCGGCTTCCGGAGATTCCAAGGTATTTTACCTTAAAATGAAAGGCGATTACCATAGATACCTGGCTGAATTCAAAACCGGTGCCGAACGGAAGGAAGCTGCCGAAAGTACCCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCCGAGTTGCCTCCCACACATCCGATCCGACTTGGATTGGCCCTCAACTTCTCTGTATTCTACTATGAAATTTTGAATTCTCCTGATCGTGCCTGCAGTCTGGCAAAACAGGCGTTTGATGAAGCCATCGCTGAGTTGGATACCCTCGGTGAGGAATCCTACAAGGATAGTACTTTGATTATGCAACTTCTCCGCGATAACCTCACTCTCTGGACCTCGGACATGCAGGACGAGGGTGCGGATGAGATCAAAGAAGCTCCCCCCAAGCGCGAGGAAGAAAAGCAGTAA 786 51.15 MATAPSLREENVYMAKLAEQAERYEEMVEFMEKVSASIDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDHHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDEGADEIKEAPPKREEEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 881107 883116 + Carg20531-RA Car12g00154 157770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00154 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Car12g00154 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Car12g00154 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Car12g00154 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Car12g00154 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Car12g00154 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Car12g00154 261 MobiDBLite consensus disorder prediction 242 261 - -
Car12g00154 261 Gene3D - 2 251 IPR036815 -
Car12g00154 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Car12g00154 261 Coils Coil 7 34 - -
Car12g00154 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Car12g00154 261 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 5 253 - -
Car12g00154 261 SMART 1433_4 8 251 IPR023410 -
Car12g00154 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Car12g00154 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Car12g00154 261 MobiDBLite consensus disorder prediction 243 261 - -
Car12g00154 261 PANTHER 14-3-3 PROTEIN 5 253 IPR000308 -
Car12g00154 261 PIRSF 14-3-3 2 250 IPR000308 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00457 Car12g00154 CCT
Car09g00495 Car12g00154 CCT
Car01g01232 Car12g00154 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00505 Car-Chr5:2929181 Car12g00154 Car-Chr12:881107 6.53E-135 dispersed
Car12g00154 Car-Chr12:881107 Car12g00168 Car-Chr12:1031087 1.53E-132 dispersed
Car01g00402 Car-Chr1:2301824 Car12g00154 Car-Chr12:881107 6.33E-163 transposed
Car01g01232 Car-Chr1:11298726 Car12g00154 Car-Chr12:881107 7.58E-176 wgd
Car12g00154 Car-Chr12:881107 Car05g00457 Car-Chr5:2622520 0 wgd
Car12g00154 Car-Chr12:881107 Car09g00495 Car-Chr9:2767971 2.48E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00154 K06630 - csv:101220164 498.049