Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00162 ATGCCGTCCAGGTACTTGAGAAAAACCGCCATTAGAGAGGAAGAGAGAAAGCTTGAGGCTGAGAGAGAGATGGAGCTCGATGAACACGGATTCTTAGAGGAGTTGATGGCTCTACGAAGAGAAGCAAATTGGGACGCCATTCCAACTGAAATCACCGATCTCAATGCTTGGGCGTTCGATTACTGTTTTGATCAGAACATTTCTAATTTCAACCCAAATTCTTCATCGGAACCTCTATCGACTCAGAACCTGGATGAATTTTATCATCCTTTGGCAAACGAGTTCTCAGTTCCAGAAATGGCCGATTCCGCCTACGCCGCCATGGAAGTAGCCGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGTGGAGGGAGAAGAAGAGGAAGAGGAATTAGGTTTTCTCGCAAACGAGATTCAGAACATGGAGGCGGTTCAAGTTCAATCGGCTTGCAAAGCGGAGCCGAATCAGTCTCCAGAACTCCCCGTTTTCAACATCGGAACATGCGCTCTCGAACGGAAGAACGGACCGAAGAAATTACAAGGCCAACCGTCGAAGAATCTGATGGCTGAAAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTTCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTAGCAGATGCAATAGATTACATGAAAGAATTGCTGGAGAAGATCGGAAATCTGCAAAGAGAAATGGATCGAACAAATCAAACAACTAGGAATTCATTCCACGACACAAAACCGAGCGAATTCGTAGTGAGAAATTCACCAAAAGTAACTGAACTTTTTTTTGGCTTTGATTTTCAAACAAGCACTCGATTCATTATTGCTGCTGTGAAACTGATTTGGAAAATCGTTGGCGTGCAGTTTGAGGTAGAAAGCAGAAACGGAAACACGAGGATCGAGATTTACTGTGCGGCGAAGCCAGGATTACTGTTATCGACGGTGAATACGATCGAAGCATTGGGGCTTGAGATTCAACACTGTGTAATCAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCGCAGGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1134 45.68 MPSRYLRKTAIREEERKLEAEREMELDEHGFLEELMALRREANWDAIPTEITDLNAWAFDYCFDQNISNFNPNSSSEPLSTQNLDEFYHPLANEFSVPEMADSAYAAMEVAAPLPFQAERPNVEGEEEEEELGFLANEIQNMEAVQVQSACKAEPNQSPELPVFNIGTCALERKNGPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYMKELLEKIGNLQREMDRTNQTTRNSFHDTKPSEFVVRNSPKVTELFFGFDFQTSTRFIIAAVKLIWKIVGVQFEVESRNGNTRIEIYCAAKPGLLLSTVNTIEALGLEIQHCVISCFNDFALQATCSQELKPEELKEALFRNAGYGGSCL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 929971 931879 - Carg20523-RA Car12g00162 157778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00162 377 Coils Coil 8 28 - -
Car12g00162 377 Pfam Helix-loop-helix DNA-binding domain 188 231 IPR011598 GO:0046983
Car12g00162 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Car12g00162 377 Coils Coil 221 248 - -
Car12g00162 377 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00538 Car-Chr9:3044325 Car12g00162 Car-Chr12:929971 2.08E-78 dispersed
Car12g00162 Car-Chr12:929971 Car14g00695 Car-Chr14:3824074 9.37E-42 dispersed
Car12g00162 Car-Chr12:929971 Car03g00782 Car-Chr3:6511291 1.85E-76 wgd
Car12g00162 Car-Chr12:929971 Car05g00509 Car-Chr5:2951105 5.70E-178 wgd
Car12g00162 Car-Chr12:929971 Car07g00521 Car-Chr7:2631738 5.53E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4379 PF00010 HLH 7.70E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00162 - - csv:101221329 470.314