Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00164 ATGGTGGTTAGAAAAGTCGGCAAATATGAGGTCGGGAGGACGATTGGGGAAGGTACGTTTGCGAAGGTGAAGTTCGCTCAGAATACTGAGACTGGCGGGAGTGTTGCTATGAAAGTTCTCGATCGGAGCACCATAATCAAGCACAAGATGGTTGAACAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACTAAGATTTATATAATCTTGGAGTACATTACTGGTGGTGAATTGTTCGACAAAATAGTTCATCATGGACGCCTTAGTGAAGCTGAATCGAGGAGATATTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATATCACAGAGATTTAAAGCCTGAAAATCTGCTACTTGACTCCCTAGGTAATCTAAAGATCTCAGATTTTGGCCTGAGTGCATTGCCCGAACAAGGAGTTAGCCTACTCCGTACGACATGCGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGGGCTATGGCAGATGTTTGGTCCTGTGGGGTAATTCTTTATGTGTTGATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGAATTTTCATGTCCATCTTGGTTTCCTGTGGGGGCAAAAGCTTTGATCCATAGAATATTTGACCCCAATCCTTCAACTCGTATTACCATTGAGCAGATCAGAGAGGACGAGTGGTTCATGAAAAATTATGTTTCGGTCAAACATTTCGAAGATGAAGATGTAAATCTGGATGACGTAAATGCTGTCTTCGATGATCCTGAGGAACAAAGGACCGAAGAAGAACGTGGTAACGAGGACATGAGCCCGCTCGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGGTTAAACCTCGGAACGATGTTTGACCGTGGCCAGGATACTATGAAGCACCCGACACGCTTCGTCTGCCAAAAGCCCGCAAAGGTTTTATTATCAACTATGGAAGTTGTAGCTCAATCAATGGGTTTCAAGACACACATTCGCAATTACAAGATGAGAGTAGAAGGTCCATCAGCAAGCAAGACTTCTTATTTCTCAGTTATTATGGAAATTTTCGAAGTCGCTCCCACGTTCTTTATGGTGGACATTCAAAAAGCAGCTGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATAGCAATCTTGAAGACATCATCTGGAAACCTTCAATCGACACCAGCAAACCAAGAACCGCCAAGAACAAGACTAAAAAACGCTGA 1341 43.1 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGGSVAMKVLDRSTIIKHKMVEQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERAEFSCPSWFPVGAKALIHRIFDPNPSTRITIEQIREDEWFMKNYVSVKHFEDEDVNLDDVNAVFDDPEEQRTEEERGNEDMSPLALNAFDLIILSQGLNLGTMFDRGQDTMKHPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSNLEDIIWKPSIDTSKPRTAKNKTKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 943512 949077 + Carg20521-RA Car12g00164 157780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00164 446 Gene3D Transferase(Phosphotransferase) domain 1 89 270 - -
Car12g00164 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00164 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00164 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Car12g00164 446 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Car12g00164 446 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Car12g00164 446 CDD CIPK_C 309 424 - -
Car12g00164 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00164 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Car12g00164 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Car12g00164 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Car12g00164 446 Gene3D Kinase associated domain 1, KA1 302 428 - -
Car12g00164 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Car12g00164 446 PANTHER - 2 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00164 Car-Chr12:943512 Car13g00407 Car-Chr13:6590710 0 dispersed
Car10g00504 Car-Chr10:2539479 Car12g00164 Car-Chr12:943512 0 transposed
Car12g00164 Car-Chr12:943512 Car05g00507 Car-Chr5:2937697 1.39E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89214 PF00069 Pkinase 9.60E-71 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00164 - - csv:101222107 837.025