Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00169 ATGTGGAACGATTGCCGCGGCGGTTTACCGGGCGCCGACCAGCCACAATTCGATCAAGAATCGTTTATTAACTTTGATTTCTTCTCGGCCACGACTAAACCTAAGGACTATTACAAGACGTTGGAGGTGGATTACGATGCAACTGATGATGATATTCGAGCCAATTACATACGACTTGCTCTGAAATGGCATCCTGACAAGCAGAAAGATCAGGATAATTCCACTTCAAGATTTCAGGAAATAAACGAGGCTTATCAAGTTTTGAGTGATCCCATCAAGAGGAGAGAATACGACATCAAAGACATGCTGTACAAATATGATTACAACGTAGTTGAATATCTCAACCGTTTCAAAGGGCTTATATTGACTTGCAATGGCCTTGGAATTAAGCATTCAATTTGGTAA 405 41.23 MWNDCRGGLPGADQPQFDQESFINFDFFSATTKPKDYYKTLEVDYDATDDDIRANYIRLALKWHPDKQKDQDNSTSRFQEINEAYQVLSDPIKRREYDIKDMLYKYDYNVVEYLNRFKGLILTCNGLGIKHSIW 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1034918 1039950 - Carg22525-RA Car12g00169 157785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00169 134 CDD DnaJ 36 90 IPR001623 -
Car12g00169 134 ProSiteProfiles dnaJ domain profile. 36 101 IPR001623 -
Car12g00169 134 Gene3D DnaJ domain 27 113 IPR036869 -
Car12g00169 134 Pfam DnaJ domain 36 98 IPR001623 -
Car12g00169 134 SUPERFAMILY Chaperone J-domain 32 120 IPR036869 -
Car12g00169 134 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 12 134 - -
Car12g00169 134 SMART dnaj_3 35 93 IPR001623 -
Car12g00169 134 ProSitePatterns Nt-dnaJ domain signature. 78 97 IPR018253 -
Car12g00169 134 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 12 134 - -
Car12g00169 134 PRINTS DnaJ domain signature 38 56 IPR001623 -
Car12g00169 134 PRINTS DnaJ domain signature 56 71 IPR001623 -
Car12g00169 134 PRINTS DnaJ domain signature 73 93 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00169 - - - cpep:111805007 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00169 Car-Chr12:1034918 Car03g01153 Car-Chr3:9213548 1.43E-16 dispersed
Car01g01247 Car-Chr1:11393536 Car12g00169 Car-Chr12:1034918 8.74E-57 wgd
Car12g00169 Car-Chr12:1034918 Car05g00504 Car-Chr5:2924524 1.24E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g487 . . . . . . . . . Cmo12g00144 Cma01g01638 . . Car12g00169 . . Cpe07g00157 . . . . . . . . . . . . . . . . . . Lsi04g02272 Csa03g04483 Chy04g00217 . . . . . . . . Bma02g00106 Sed13g1547 Cmo01g01685 . Cma12g00186 . . . . . Bhi09g02487 Tan01g3840 Cmetu04g2532 . Hepe01g2162 Mch11g0701 . Cla11g01415 Cam11g1472 Cec11g1502 Cco11g1497 Clacu11g1633 Cmu11g1451 Cre11g1869 . . . Cme04g00245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002065 3 2 1 1 2 1 3 2 2 2 2 1 3 2 1 3 1 4 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00169 Car_Chr12 FPKM 1.20805 2.908977 0.0 0.568302 1.53152 2.385807 2.642408 0.608907 0.425482 0.26583