Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00170 ATGGCCTCCATTTCTGGCATTTGTTCTTCCTCTCCATCCTTGAAGCCTCAGACCAAGACTTCGTTTCTTGGAACTACCGGATCATTGCGCAAAGATTCAGTGTCATTTCCAATTCGTGCGAAGTATAATGATGGAAAATTAGGTGCTGGAGCTGCTCAATCAGTGGCCAAAGAGATCTCGGTCGGATTGTCTACTGCTGATGGAGGGGTTAAGAAGGGTTTGGAGAAAGATCCTCAGGCGCTGTGGAGTAGGTATGTTGACTGGCTTTACCAGCACAAGGAGCTTGGGCTGTTTGTGGATGTAAGTCGGATTGGATTCTCGGATGAGTTCTTGGCCGAGATGGAGCCTCGATTTCAAGCTGCTTTCAAGGCTATGGAGGAGCTTGAGAAGGGCGCGATTGCCAATCCGGACGAGGGACGCATGGTTGGGCATTATTGGCTGAGGAACTCTGAACTTGCGCCCAACTCGTTCTTGAAGACGCAGATCAATAATACTCTAGATGCTGTGTGCAATTTTGCGGACGATATCATCAGCGGTAAGATTAAGCCCCCATCTTCACCCGAGGGCCGCTTTACCCAGATACTGTCTGTTGGAATTGGAGGGTCAGCTCTTGGCCCGCAGTTTGTGGCTGAGGCATTGGCTCCGGATAATCCCCCGCTTAAGATACGATTTATTGACAATACAGACCCAGCAGGAATTGATCATCAGATTGCACAACTAGGACAGGAATTGGAAACTACTCTTGTAATAGTGATTTCGAAGAGTGGAGGCACTCCTGAAACTAGAAATGGTTTGCTGGAAGTACAGAAGGCGTTTCGCGAGGCTGGCTTAAATTTTGCAAAACAGGGTGTTGCTGTAACACAAGAAAATTCATTGTTGGACAACACTGCAAGGATTGAAGGATGGTTGGCCAGGTTCCCAATGTTTGATTGGGTAGGTGGTAGAACATCAGAAATGTCTGCAGTTGGTCTACTTCCAGCTGCACTTCAGGGAATTGACATTCGAGAAATGCTTGCTGGTGCTGCTTTGATGGACAATGCAACCAGATCAACTGAGATTAGAAATAATCCTGCAGCATTGCTTGCTTTGTGCTGGTACTGGGCTTCTGATGGCATAGGATCTAAGGATATGGTTGTTCTTCCCTACAAGGATAGCTTGTTATTATTTAGTCGTTATTTGCAGCAACTGGTCATGGAATCCCTTGGAAAAGAGTTTGATCTCGACGGAAATCGGGTTAATCAGGGACTTACAGTATATGGGAACAAAGGGAGTACAGATCAACATGCCTATATTCAACAATTGAGGGAAGGTGTGCACAATTTCTTTGTGACATTTATTGAAGTGCTGCGTGATAGGCCCCCTGGTCATGATTGGGAGCTTGAGCCAGGTGTTACATGTGGTGACTACCTTTTCGGTATGCTACAGGGAACAAGATCTGCACTCTATGCTAATGATAGGGAGTCCATCTCAGTCACTGTTCAAGAAGTGACTCCTAGAACTGTTGGCGCAATGGTAGCACTTTATGAAAGAGCAGTAGGATTATATGCCAGCCTTGTCAACATTAATGCATACCATCAACCTGGTGTGGAAGCTGGAAAGAAAGCAGCAGGGGAAGTGTTGGCTCTCCAAAAGCGCGTCTTGGCAGTACTTAATGAGGCCAGCTGTAAAGAGCCTGTGGAACCATTGACACTTGATGAAGTAGCTGAACGCTGTCATGCTCCTGAGGATATTGAAATGATCTACAAGATTATTGCTCACATGGCCGCCAATGATAGAGCACTGATTGCTGAAGGCAGTTGTGGCTCACCACGCAGCATTAAGGTTTTCCTTGGAGAATGTAATCTTGACGAGTTGTATGCTTAG 1863 46.32 MASISGICSSSPSLKPQTKTSFLGTTGSLRKDSVSFPIRAKYNDGKLGAGAAQSVAKEISVGLSTADGGVKKGLEKDPQALWSRYVDWLYQHKELGLFVDVSRIGFSDEFLAEMEPRFQAAFKAMEELEKGAIANPDEGRMVGHYWLRNSELAPNSFLKTQINNTLDAVCNFADDIISGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGQELETTLVIVISKSGGTPETRNGLLEVQKAFREAGLNFAKQGVAVTQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGAALMDNATRSTEIRNNPAALLALCWYWASDGIGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESISVTVQEVTPRTVGAMVALYERAVGLYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLDEVAERCHAPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKVFLGECNLDELYA 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1042492 1048947 + Carg22524-RA Car12g00170 157786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00170 620 Hamap Glucose-6-phosphate isomerase [pgi]. 94 543 IPR001672 GO:0004347|GO:0006094|GO:0006096
Car12g00170 620 Pfam Phosphoglucose isomerase 124 450 IPR001672 GO:0004347|GO:0006094|GO:0006096
Car12g00170 620 Pfam Phosphoglucose isomerase 481 541 IPR001672 GO:0004347|GO:0006094|GO:0006096
Car12g00170 620 ProSitePatterns Phosphoglucose isomerase signature 2. 516 533 IPR018189 GO:0004347|GO:0006094|GO:0006096
Car12g00170 620 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 74 549 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00170 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101222586 1168.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00170 Car-Chr12:1042492 Car12g00451 Car-Chr12:2846377 8.08E-25 dispersed
Car12g00170 Car-Chr12:1042492 Car05g00195 Car-Chr5:1024360 1.35E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g489 . . Bda01g00916 Bda03g00461 . Bpe04g00422 Bma04g00436 . . Cmo12g00145 . . . Car12g00170 . . Cpe07g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01160 . . . . . . Cma12g00187 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009057 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00170 Car_Chr12 FPKM 40.027477 47.109203 36.714497 37.555397 34.679085 36.182892 32.523113 74.271614 78.528496 72.507133