Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00172 ATGACTAACCGAAACGCCGAGCCTTTTCAGGGAGAATCCGACGATCCTCCGCCGCCGCCACCTCCTCCTCCGCAGGATCCTGCTGATGGTTCTTGTGCTGGAAACACGGTTTTCAAGAGTGGGCCACTTTTCCTATCATCAAAAGGGATTGGATGGACGTCCTGGAAAAAGAGATGGTTCATTCTAACACGTACTTCACTGGTTTTTTTTCGAAGTGATCCAAATGCTGTTCCTCAGAAAGGGGGTGAGGCGAATTTGACTCTCGGTGGCATTGATCTCAACAATTCAGGCAGTGTTGTTGTGAAAAGTGAAAAAAAACTCTTGACCGTGCTCTTTCCTGATGGTCGAGAAGGACGTGCATTCACACTCAAGGCTGAAACATTGGAGGACCTCTATGAGTGGAAAGCCGCACTGGAAAATGCTTTGGCACAGGCACCCAGTAGTGCCAATGCTAATGGTATCTTGAAGAATGATAAGATGGAACCAAATAATGGGTCTTCAGAGACGTTGAAAGATGGCCAACCACAACCTGGAAGACCGAGAGTCCTTGGTAGGCCAATTTTGCTTGCTTTGGAAGATGTTGATGGAACTCCCTCTTTTCTGGAGAAAGCCCTTAGGTTTATAGAAACCCATGGAGTCAAAGTAGAAGGCATTTTGCGACAAGCTGCAGATGTTGACGATGTTGAACATCGTTTGCGGGTATATGAGCAGGGAAAAAACGAGTTTTCTCCAGAAGAAGATGCACATGTAGTGGGTGACTGCGTGAAGTATGTCATCCGGGAGTTACCATCATCTCCAGTTCCAGCATCTTGCTGTAACGCTTTGCTAGAAGCAAGCAAAACTGAACGAGGTGGCAGAGTCAATGCTATGCGATCTGCAATATACGAAACCTTTCCAGAACCAAATCGCCGTTTACTGCAGAGAATTCTTATGATGATGCAAACTGTGGCTTCTCATAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGGCAGCTTGCATGGCCCCCTTACTCCTTCGTCCTCTTTTAGCTGGTGATTGTGAAATTGAAACTGATTTTGACGTGGGGGGTGATGGTTCCATTCAACTTCTTCGTGCAGCTGCCGCAGCAAACCATGCTCAAGCCATAGTTATTACTCTACTGGAGGAGTATGACAAAATTTTTGGGGAAGGTTCTATGTCCCCTATATTATACTCTGATTCAGAAGAGAGTGGAAGTGAGAGCGAGGAGGCAAGTGATGGTGATATGTCTTATGATGATGAAGAACAAGATGATGCTACTGGTTCTGATGTGGCAACAGACGATGAGCTGGAATCAACTGGAACCTGTACTGGGAGTGTCGGCTCTGGGGAGCATGATTTATATGATGATAAGGCACTATTGAGTACTAGTTCGAAGAATTCCGATATGTGTGATGTAAATGGAATGAAGCCAAAGTCATCAAAGGAGAGAATCCATGACAAAACTGATCGAGGTAGGGGTAGTTCACCAATTAAGGATGAGAAGTCCTGTGAAGTTGAATGTGCATCCGAAAGCTTTGAAGGTTCTCCAACTACATCTAATAAAAGTTCCAACACGACAAAGCGTCTCACCATTTGGGGACGCACGCCTGCAAAGAAGAAACTCTCCTTGGAATCCATTGATTATGATTTCGGCGAAGAGGTTGAGATTCAGAGACTTGAGGCCACTAAATGTGAACTGCAAAATAAAATCGTGGAGGCGGCGCGAGAAAATGCGATTCTCCAATCCAGTTTGGAAAACCGAAAGAAGATCTTGCAAGAGCGTCGTCTAACTCTTGAGCAAGAAGTAGCAAGACTAAGAGAACAGTTGCAAAGGGAGAAAGATCCCTCAGCTAATGTTAGTGAAAAGACAAAGGCAGATCTTGGAGAAAGCAATCGAGGCGAGAAAGACACTGCCAATATAAACAACACAATGGATGAATTTGTAGGACTGCTTAATAGGATACGTGATCAGAAAAGTAACCTACCTGATTTACGTAATGTCTCCCAACAAATGCAGAATCATCAAACAAAATTGAAGGACAAGAGGAAGGATGCTGGAAGTTTAGTCCCTCCTGAACACTCCAGAAATAAGGATGTTCTTTCCGGTCATGCAGAAATAAGTAAACATTCCCCTCTACACCAGCATCTAGATCCTCATAATCCCAGTGCCAAAATAGGTGTATTGGCAACCAATTTCGCAACGGGTCTAACCAATCCTAAGAGGACTGGTGCGAGGATGGAGCTGGGACCAAATCACAATTCTTCAGCACTGACGAAACTGACGACCAGACTCAACTTCTTGAAGGAGCGTCGCAGCCAGATAGCAAATGAACTCCAGAATATGGACCGGGGACGAGTTTCGGGCCAATCAACCGACGGTTCTGAAAAGGGCAGGGGAGTTGAAGCTCAGCGCTCAGTCCAAAACTCAGATGACACTAAAGGGTCTGCTGACAATCTCCAATCCATTCAGGACTCCGATAAGCGAGCGGGAAGCCAAGGCAGCCAGCCCCAAAAATCAGATGCCAGATAA 2532 45.58 MTNRNAEPFQGESDDPPPPPPPPPQDPADGSCAGNTVFKSGPLFLSSKGIGWTSWKKRWFILTRTSLVFFRSDPNAVPQKGGEANLTLGGIDLNNSGSVVVKSEKKLLTVLFPDGREGRAFTLKAETLEDLYEWKAALENALAQAPSSANANGILKNDKMEPNNGSSETLKDGQPQPGRPRVLGRPILLALEDVDGTPSFLEKALRFIETHGVKVEGILRQAADVDDVEHRLRVYEQGKNEFSPEEDAHVVGDCVKYVIRELPSSPVPASCCNALLEASKTERGGRVNAMRSAIYETFPEPNRRLLQRILMMMQTVASHKAENRMSSSAVAACMAPLLLRPLLAGDCEIETDFDVGGDGSIQLLRAAAAANHAQAIVITLLEEYDKIFGEGSMSPILYSDSEESGSESEEASDGDMSYDDEEQDDATGSDVATDDELESTGTCTGSVGSGEHDLYDDKALLSTSSKNSDMCDVNGMKPKSSKERIHDKTDRGRGSSPIKDEKSCEVECASESFEGSPTTSNKSSNTTKRLTIWGRTPAKKKLSLESIDYDFGEEVEIQRLEATKCELQNKIVEAARENAILQSSLENRKKILQERRLTLEQEVARLREQLQREKDPSANVSEKTKADLGESNRGEKDTANINNTMDEFVGLLNRIRDQKSNLPDLRNVSQQMQNHQTKLKDKRKDAGSLVPPEHSRNKDVLSGHAEISKHSPLHQHLDPHNPSAKIGVLATNFATGLTNPKRTGARMELGPNHNSSALTKLTTRLNFLKERRSQIANELQNMDRGRVSGQSTDGSEKGRGVEAQRSVQNSDDTKGSADNLQSIQDSDKRAGSQGSQPQKSDAR 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1055716 1073031 + Carg22522-RA Car12g00172 157788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00172 843 MobiDBLite consensus disorder prediction 476 503 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 609 641 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 666 701 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 403 432 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 12 28 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 152 173 - -
Car12g00172 843 Pfam PH domain 38 142 IPR001849 -
Car12g00172 843 Coils Coil 665 685 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 1 33 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 152 181 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 395 449 - -
Car12g00172 843 Pfam RhoGAP domain 198 341 IPR000198 GO:0007165
Car12g00172 843 MobiDBLite consensus disorder prediction 676 701 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 466 503 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 433 447 - -
Car12g00172 843 ProSiteProfiles Rho GTPase-activating proteins domain profile. 189 388 IPR000198 GO:0007165
Car12g00172 843 Coils Coil 758 778 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 609 634 - -
Car12g00172 843 MobiDBLite consensus disorder prediction 776 843 - -
Car12g00172 843 Coils Coil 582 609 - -
Car12g00172 843 ProSiteProfiles PH domain profile. 36 143 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00172 - - - cmax:111495950 1576.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00812 Car-Chr10:4459648 Car12g00172 Car-Chr12:1055716 0 dispersed
Car11g00778 Car-Chr11:4546284 Car12g00172 Car-Chr12:1055716 1.81E-168 dispersed
Car12g00172 Car-Chr12:1055716 Car05g00502 Car-Chr5:2902706 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g493 . . . . . . . . . Cmo12g00147 . . . Car12g00172 . . Cpe07g00160 . . . . . . . . . . . . . . Cone4ag1303 . . . . . . . . . . . Bpe02g01158 . . . . . . Cma12g00190 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003403 0 1 1 0 1 1 2 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 12 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00172 Car_Chr12 FPKM 15.184742 15.510039 3.325634 4.462847 3.380764 3.36974 3.088272 0.265805 0.135788 0.143064