Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00175 ATGACTACGGATCTCGGATGCGTGATCGTGGCCGTCGATGGCAGCGAGGAAAGCATGAGCGCGTTACGGTGGGCGCTTCAAAATCTCAAGCTCCGGCCATCGGCGCCGGGCGTCACTGACAGCACTTTTATTGTGCTGCATGTTCAACCTCCTCCTTCAATCGCCGCCGGTCTCAGTCCTGCTCCAATCCCCTTTGGTGGTCCTACCGATCTGGAGGTTCCTGCTTTCACTGCAGCGATCGAGTCGCATCAGAAGCGGATTACGGCTGCGATATTGGAACATGCTTCACGGATTTGCGCCGAGTACAAGATGAACGTGGAAACAAAAGTAGCAATCGGAGATCCAAAGGATAAGATCTGTGAAGTGGCTGAGAATTTGCATGCTGATTTGCTAGTTATGGGATCCCGTGCCTTTGGTCCTATCAAAAGGATGTTCTTGGGAAGTGTAAGCAACTATTGCACCAATCATGTGGAATGCCCAGTCATCGTAGTCAAGGACAAGTTAAAGGGCAGTTCGTCATGA 522 51.34 MTTDLGCVIVAVDGSEESMSALRWALQNLKLRPSAPGVTDSTFIVLHVQPPPSIAAGLSPAPIPFGGPTDLEVPAFTAAIESHQKRITAAILEHASRICAEYKMNVETKVAIGDPKDKICEVAENLHADLLVMGSRAFGPIKRMFLGSVSNYCTNHVECPVIVVKDKLKGSSS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1080652 1085023 - Carg22519-RA Car12g00175 157791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00175 173 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 167 - -
Car12g00175 173 CDD USP_Like 8 164 - -
Car12g00175 173 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 3 166 - -
Car12g00175 173 Gene3D HUPs 2 172 IPR014729 -
Car12g00175 173 PANTHER OS02G0760500 PROTEIN 3 166 - -
Car12g00175 173 PRINTS Universal stress protein signature 5 23 IPR006015 -
Car12g00175 173 PRINTS Universal stress protein signature 125 137 IPR006015 -
Car12g00175 173 PRINTS Universal stress protein signature 143 165 IPR006015 -
Car12g00175 173 Pfam Universal stress protein family 8 165 IPR006016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00175 - - - csv:101203754 303.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00175 Car-Chr12:1080652 Car15g00711 Car-Chr15:3950475 2.00E-22 dispersed
Car05g00949 Car-Chr5:9133225 Car12g00175 Car-Chr12:1080652 7.85E-35 transposed
Car14g00844 Car-Chr14:4987573 Car12g00175 Car-Chr12:1080652 3.37E-33 transposed
Car18g00933 Car-Chr18:10040475 Car12g00175 Car-Chr12:1080652 1.36E-28 transposed
Car12g00175 Car-Chr12:1080652 Car05g00499 Car-Chr5:2890663 3.14E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g498 . . Bda01g00914 . . . . . . Cmo12g00148 . . . Car12g00175 . . Cpe07g00163 . . . . . . . . . . . . . . . Cone7ag0852 . . . . . . . . . . Bpe02g01155 . . Bma02g00108 . . . Cma12g00194 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004387 2 3 2 2 2 2 2 1 1 1 1 0 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00175 Car_Chr12 FPKM 6.591468 6.188948 10.809755 9.810474 3.967905 3.537295 4.012283 0.925188 0.655343 0.913462