Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00176 ATGCTTGTCGTTGGAGATTTAGGGTTTCAGATTCTGGTCCTTGCTGCTTGTTTGGTTTTTCCCGTTTTTGGTATTGTTCTTCGTCGCAAATGGCGGCTTGGTATGGCCAGGTCGGAAGAGATCAACCGGCTCTTGGTTTTGGCGTCTGAGGAAGCTGCTAGGGTTGAAATTGAGGCATCGTTTGGGTGTACTGCTGCGCCGATTTCTCTGAATCTTCATTGTGCTGTTTGTCTCAGTCCCACGACCACCCGTTGCGCTCGGTGTAAAGCAGTTCGATACTGTTCTGGCAAATGTCAAATTATTCACTGGCGACAAGGTCATAAAACCGAATGCCATCCACCCGAAACGTCTGATTGGTCTTTAGAGAAGGAAAATGATTATGGGGATAGGATAGCAAACCAACACCACTCTATTAGTTATGACAACAAATTTGGTATTGAAAATGGGCAACATATAGAACCAGATGAGGTATTGTATGACAAACTTACATTACCCAGCTCTGATGACTCTGTAAAGAATGTTAGTGTGGAGTTGCATGCAGATGAGGAGGAGAATTCAACTACAGAATTTGCTGATGCCACATTTAACACTGAATCATTTGATGATGCCTCAAGAAGTGAGAACAGTAGTGAGTCTTGTTCCCCACGATCTGATGGATATTTATCTGCTCAAAAATCCTTTGACAAGGATGATTCTACATCCAGATTATCAATTGTTGATCCAAACAAGCCATTATCTCCTAACTATGCTCACTTGGTAAACTCTGTTGATAAATTCACTAAACGGAAAACAGAAAATCATCCTGCATTCGTTGGGATTGATCCAGTTTATGATAACCATTCAAGGGCTGCTGAAGTTAGTATAGATGGGAGTTGTGAAGCTACTTCTAGTTTTCAAGAACATAATGGAAATTCTATTCGGTTGAAAGATGGTGTTCATGATGACTCTGTCCCATCTAGTATTAATGGTGCCAAGAACAAAACAATTCCGGGAAGTCATTCGTTCCTACACTTTTCATTCAGTGTGTCTGGGGGTACTCCATCCGACGCACAAGTTGCTCAAGTAAATGAAAATGTAGCAGATGGAAGTCTTCATACTACTTCGGGGATAAACAGAACGGCTGGATCTAATTTGCAATCAGATATCAATATCGACTCTTCAGAGGTTAGAAATTCACCCTCAAGTTGTGAAGGATCTGGGGAAAAAGATAACACCGCTAAGGAACTGTCAGATCACCCTGTAGTTTATTCGATGATATCTTCATCACCTCGTATCAGTCCGTTCCCTGCTGTTTCTAAATCTGAATCAAGAAGTGTTCGTGATTCAAATACAAGTATGTCAGCACCCTTGAAGTCTGAAAGGTCATGCCCAGTTTTCATCCAGCCGGATAATTCTAAAATTGTATCAAAGCATAGTGGTAATGGATCTTTAGTGAATGATTCCAGTGTTCATTTGCCTACAATTAGTAGTAGGGAGTCAGTTCCTCCGACCGATTCTAGAAAAGTTGGTCCGACACAGGTTGGTGCTGGTGTTTCTTCTTTGGATGCAAACTTTTCGCGCAAGTCAGCTTATGGCTTTAGACCTTTTGCTCTCAATGAGATTAAATCTAAATCGGATCACAGTTATGTAACGAACGACAGTGAGAATGCTGGAAAATACAATTACAAGGGACACCTCCCGTTTGAGCTGCTTGTCGATCTATATAATTGGAACAAAGTGGAGCTCCAACCATCTGGCCTTGTCAACTGCGGCAATAGCTGCTATGCAAATGTTGTACTCCAGTGTTTGATATTCACTCCGCCTTTGACAGCCTATTTTCTTCAGGGACTGCATTCTAAAGCATGTATACAGAGTGCCACTTTTATCACTTTGTATTATGTTCTATTTTATAACAGTACCTTTGAATTTATTTGGCTTAAAACCTTTAGTTTTTGCTTTTGCATATTAGGTGCAAAGGAGAGATGGTGCTTTACCTGTGAGTTCGAAAGTCTAATACTCGAGGCAAAAGAAGGCAAATCTCCACTATCTCCGTTCAGAATAATTTCTCAACTGAGAAAAATTGGTAGTCAACTCGTTAACGGGAAAGAGGAGGACGCACACGAGTTCTTGAGGTGTGCTATTGACACGATGCAATCGATTTGCTCTATGGAAGCTCAAGTAAGTCGATCGGGCCCTATGGAAGAAGAAACAACTCTAATAGGCTTTACATTTGGTGGCTACCTCCTATCAAAGATCAAATGCACAAGATGTGAGAACAAGTCTGAACGAATCGAAAGGATTTTAGATCTTACTGTTGAGATAAGTGGGGATATTGAAACGATCGAAGAAGCTCTTCAACAATATACAAGCATCGAGATTTTAGACGGGGACAATAGATACCAATGTGGCAGATGCAAATCTTACGTGAAAGCCAATAAAAGGCTGTCAATATTGGAGGCTCCCAACATCCTGACTATAGCATTAAAACGATTCCAGTCAGGTAAATTTGGGAAGCTCAATAAGCCGGTTATTTTCTCGGAGATCCTTGATCTCGCACCCTATATGAGTAGCAGAAGTGACAAGTCACCTGAATACAGGCTTTACGGAGTGATTGTTCATTTGGATGTCATGAATGCTGCATTTTCTGGTCACTATGTATGCTATATCAGGAATAACCAAAACAAGTGGTTCAAGATCGACGACAGCACGGTAACAGCTGTGGAATTTGAAAATGTACTGACAAGAGGGGCATACATGCTCTTCTATGCAAGATGCTCACCTAGGGCCCCAAGGTTGATCAGAAGCAAAGTTATGACCGATTCCGAAGAGGGATGCATTCCATCTTTGATTAGTGGGAAGAGTACCTCATTTAAACCAAGTCCCAACTCCACATATCCTGATTCCCAGAACCCCCATATCTACAACAATTCATCAAATGATTCTTCAAATATCAGTTCGTTTTATCGAAAATTTCATCAGCTCCAGAAGCTGTTGGAAGACGACTTAACGAGCGATAGTTCTTCTCTTCTCAGTAGCAACTCTGATGAAAGCTCTTGCAGCACCAACAGCAGCAGTGACTCAACGGGCACGGAGGACTTACCAGAGTACATTTATAGCGACTCTGGATGTGGTTGGAATGGTTTGCAAAATCGTTCTGACACAAACACTTCTTTACCATCGTCGTCATCCTCCCCGCTTTTGCATCCAGCTGATTCAAGCCAATATGCACCAGTTCGTGCTAAAACAACCGAGTCTCGACCTGCTCGTCCCTACCAAACCAATGGGATTAGTAATCTCACAAGTAGGCGAGAATCGACCTGTAGAGAGAAAGCCATGCACTTGATGGAGGATAAGAAGAATGGCTGGCGTTAG 3351 41.99 MLVVGDLGFQILVLAACLVFPVFGIVLRRKWRLGMARSEEINRLLVLASEEAARVEIEASFGCTAAPISLNLHCAVCLSPTTTRCARCKAVRYCSGKCQIIHWRQGHKTECHPPETSDWSLEKENDYGDRIANQHHSISYDNKFGIENGQHIEPDEVLYDKLTLPSSDDSVKNVSVELHADEEENSTTEFADATFNTESFDDASRSENSSESCSPRSDGYLSAQKSFDKDDSTSRLSIVDPNKPLSPNYAHLVNSVDKFTKRKTENHPAFVGIDPVYDNHSRAAEVSIDGSCEATSSFQEHNGNSIRLKDGVHDDSVPSSINGAKNKTIPGSHSFLHFSFSVSGGTPSDAQVAQVNENVADGSLHTTSGINRTAGSNLQSDINIDSSEVRNSPSSCEGSGEKDNTAKELSDHPVVYSMISSSPRISPFPAVSKSESRSVRDSNTSMSAPLKSERSCPVFIQPDNSKIVSKHSGNGSLVNDSSVHLPTISSRESVPPTDSRKVGPTQVGAGVSSLDANFSRKSAYGFRPFALNEIKSKSDHSYVTNDSENAGKYNYKGHLPFELLVDLYNWNKVELQPSGLVNCGNSCYANVVLQCLIFTPPLTAYFLQGLHSKACIQSATFITLYYVLFYNSTFEFIWLKTFSFCFCILGAKERWCFTCEFESLILEAKEGKSPLSPFRIISQLRKIGSQLVNGKEEDAHEFLRCAIDTMQSICSMEAQVSRSGPMEEETTLIGFTFGGYLLSKIKCTRCENKSERIERILDLTVEISGDIETIEEALQQYTSIEILDGDNRYQCGRCKSYVKANKRLSILEAPNILTIALKRFQSGKFGKLNKPVIFSEILDLAPYMSSRSDKSPEYRLYGVIVHLDVMNAAFSGHYVCYIRNNQNKWFKIDDSTVTAVEFENVLTRGAYMLFYARCSPRAPRLIRSKVMTDSEEGCIPSLISGKSTSFKPSPNSTYPDSQNPHIYNNSSNDSSNISSFYRKFHQLQKLLEDDLTSDSSSLLSSNSDESSCSTNSSSDSTGTEDLPEYIYSDSGCGWNGLQNRSDTNTSLPSSSSSPLLHPADSSQYAPVRAKTTESRPARPYQTNGISNLTSRRESTCREKAMHLMEDKKNGWR 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1086759 1092953 + Carg22518-RA Car12g00176 157792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00176 1116 Pfam Ubiquitin carboxyl-terminal hydrolase 579 915 IPR001394 GO:0004843|GO:0016579
Car12g00176 1116 Pfam MYND finger 74 111 IPR002893 -
Car12g00176 1116 MobiDBLite consensus disorder prediction 1041 1089 - -
Car12g00176 1116 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 579 594 IPR018200 GO:0004843|GO:0006511
Car12g00176 1116 ProSiteProfiles Zinc finger MYND-type profile. 74 111 IPR002893 -
Car12g00176 1116 MobiDBLite consensus disorder prediction 470 506 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 425 451 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 386 400 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 195 241 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 943 969 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 425 454 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 195 221 - -
Car12g00176 1116 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 578 918 IPR028889 -
Car12g00176 1116 MobiDBLite consensus disorder prediction 470 500 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 997 1026 - -
Car12g00176 1116 MobiDBLite consensus disorder prediction 386 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00176 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101207855 1446.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00522 Car12g00176 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00597 Car-Chr4:3409660 Car12g00176 Car-Chr12:1086759 2.49E-61 dispersed
Car12g00176 Car-Chr12:1086759 Car16g00419 Car-Chr16:2601804 4.49E-58 dispersed
Car01g01259 Car-Chr1:11447884 Car12g00176 Car-Chr12:1086759 0 wgd
Car12g00176 Car-Chr12:1086759 Car04g00773 Car-Chr4:4452341 3.99E-31 wgd
Car12g00176 Car-Chr12:1086759 Car05g00498 Car-Chr5:2880994 0 wgd
Car12g00176 Car-Chr12:1086759 Car09g00522 Car-Chr9:2929452 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g499 . Blo12g00729 . Bda03g00459 . Bpe04g00420 Bma04g00434 . . Cmo12g00149 Cma01g01643 Cma09g00591 . Car12g00176 . Cpe06g00452 Cpe07g00164 . . . . . . . . . . . . . . Cone4ag1301 Cone7ag0854 . . Lsi04g02276 Csa03g04488 Chy04g00212 . . . . . . . . Bma02g00109 Sed05g1565 Cmo01g01692 Cmo09g00577 Cma12g00195 . . Car09g00522 . . Bhi09g02494 Tan01g3848 Cmetu04g0414 . Hepe01g2166 Mch11g0705 . Cla11g01420 Cam11g1476 Cec11g1506 Cco11g1502 Clacu11g1637 Cmu11g1455 Cre11g1873 . . . Cme04g00241
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008667 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 7 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00176 Car_Chr12 FPKM 13.675357 15.412726 12.286452 11.495116 15.323971 13.862144 15.405153 5.374496 4.419932 4.195027