Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00177 | ATGAAAGGCGATTCCACCGCTACCGGTGTACATCCGCTGTTTAAGCACTTTTCCGACCCCAGCTCCGCCGTCACCGACGGCTCCACCATCGAGGTGGTGCGGCGGCCGAGGGGTCGACCGCCGGGGTCCAAAAATAAACCGAAACCGCCTCTTGTCATAACCCGGGAAAACGACTCGGCTATGCGGCCGTATGTTCTAGAAGTGCCTGGAGGAAACGACGTCGTTGAAGCAATTTCGCGGTTCTGTTGTCGGAAGAATATGGGTCTTTGTGTTCTTAACGGCTCTGGGACGGTTGCGAATGTTTCTCTCCGGCAACCCTCGGCAACTCCCGGCGCCGCCGTCACGTTTCACGGCCGGTTTGAAATACTTTCCATTTCGGCTACTGTGTTTCCTCAAACGACGGCGTTTCCTCTTCCCAATGGCTTCACCATCTCGCTTGCTGGACCTCAGGGACAAATCGTCGGCGGGTTGGTCGCCGGCGCCTTGATTTCCGCTGGTACAGTTTTTGTCGTTGCCTCGTCGTTCAATAACCCCTTGTACCACCGGCTACCGGATGAGAATGAGACTCAGAATTTGGGATCCGGTGGCAGCGGCGAGGCTCATTCCCCACATGTCTCCGGCGGCGGAGATAGTAGCGGGCACGGCCACGGGCAACCACTTCTGGAATCGTGTGGAGTGGCTATGTACAGTTGCCACGCACCGTCCGATGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGCCGCCATACTGA | 759 | 58.1 | MKGDSTATGVHPLFKHFSDPSSAVTDGSTIEVVRRPRGRPPGSKNKPKPPLVITRENDSAMRPYVLEVPGGNDVVEAISRFCCRKNMGLCVLNGSGTVANVSLRQPSATPGAAVTFHGRFEILSISATVFPQTTAFPLPNGFTISLAGPQGQIVGGLVAGALISAGTVFVVASSFNNPLYHRLPDENETQNLGSGGSGEAHSPHVSGGGDSSGHGHGQPLLESCGVAMYSCHAPSDVIWAPTARQPPPPPPY | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1096114 | 1096872 | - | Carg22517-RA | Car12g00177 | 157793 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00177 | 252 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 62 | 177 | IPR005175 | - | |
| Car12g00177 | 252 | ProSiteProfiles | PPC domain profile profile. | 58 | 196 | IPR005175 | - | |
| Car12g00177 | 252 | MobiDBLite | consensus disorder prediction | 182 | 217 | - | - | |
| Car12g00177 | 252 | MobiDBLite | consensus disorder prediction | 183 | 197 | - | - | |
| Car12g00177 | 252 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00177 | Car-Chr12:1096114 | Car15g00111 | Car-Chr15:651206 | 5.95E-49 | dispersed | |
| Car10g00817 | Car-Chr10:4510276 | Car12g00177 | Car-Chr12:1096114 | 2.06E-52 | transposed | |
| Car01g01260 | Car-Chr1:11456219 | Car12g00177 | Car-Chr12:1096114 | 2.55E-91 | wgd | |
| Car12g00177 | Car-Chr12:1096114 | Car05g00497 | Car-Chr5:2875366 | 3.33E-120 | wgd | |
| Car12g00177 | Car-Chr12:1096114 | Car09g00523 | Car-Chr9:2938508 | 4.89E-99 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00177 | - | - | cmos:111454367 | 446.817 |