Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00179 ATGGCGAGGGAGAAGATCAAGATTAAGAAGATCAGCAACTTAACGGCGAGGCAAGTGACGTTTTCGAAGCGACGGCGAGGGCTTTTTAAGAAGGCGGAGGAGTTGTCGGTGCTCTGCGACGCCGAGGTGGCGCTGCTCGTCTTCTCCGCTACCGGAAAGCTCTTCGAGTTTTCCAGTTCCAGCGTTAAGGATGTTATTACAAGATACAATTTGCACTCCACTAACCTTGGAGAGTTGGAAGATCCCTCCCTTGACCTACAGCTCGAGAATAGCAGCCACGCTCGGTTGACCAAGGAAGTTGCAGACATGAGCCATCGACTGAGGCAGATGAGAGGAGAGGATCTTCAAGGATTGAATTTAGAAGATTTGAAGCAATTGGAAGGAGTGCTTGAAGTAGGCCTCGCTCGTGTTATTCAAACCAAGGAAAGGAAGATTATGAATGAAATTAATGCGCTTGAGCTTAAGGGAGCCAGATTGATGGAAGAGAACAGGACGCTGAATCGGCAGATGATAAGGTTGTCGAATCAAAGAAGGCCACTGCTGGTAGTTTCCGACGTTCCGGTGCCGGAAGAAGGGGTTTCGTCGGACTCCGCCGCCAATGTGTACAGCTGCAACAGCGGCCCTCCCGCCGACGACGACAGCTCCGATACCTCTCTCAAATTAGGGTGA 669 50.82 MAREKIKIKKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSSSSVKDVITRYNLHSTNLGELEDPSLDLQLENSSHARLTKEVADMSHRLRQMRGEDLQGLNLEDLKQLEGVLEVGLARVIQTKERKIMNEINALELKGARLMEENRTLNRQMIRLSNQRRPLLVVSDVPVPEEGVSSDSAANVYSCNSGPPADDDSSDTSLKLG 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1106121 1108703 + Carg22515-RA Car12g00179 157795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00179 222 Coils Coil 93 113 - -
Car12g00179 222 Coils Coil 149 176 - -
Car12g00179 222 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car12g00179 222 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car12g00179 222 MobiDBLite consensus disorder prediction 189 222 - -
Car12g00179 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car12g00179 222 MobiDBLite consensus disorder prediction 196 222 - -
Car12g00179 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car12g00179 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00179 Car-Chr12:1106121 Car19g00350 Car-Chr19:5391161 9.00E-56 dispersed
Car07g01154 Car-Chr7:6960222 Car12g00179 Car-Chr12:1106121 4.37E-62 transposed
Car12g00179 Car-Chr12:1106121 Car03g00779 Car-Chr3:6495384 1.66E-36 wgd
Car12g00179 Car-Chr12:1106121 Car07g00505 Car-Chr7:2547378 1.07E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4380 PF01486 K-box 1.30E-14 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00179 - - csv:101213234 332.798