Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00180 ATGAACGACGCCTCTGTCAAAGGCCTCGAAGTCTTCGATTTCACCGAAGAAGACGAGCTTCCTGAATTGATCTCCGAGAAGTGTCTCAGCAAATTCAAAAACCCTAATCTCGAAACTAACTCTGTTTTGAAGTATGGATGTCTTGAATTAGGGAAAGAGGTTGAAAACCCACATATGGATGTTGACTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATATCCCCCCGGGCATATCTAAAGAGCAATTGATCATGGAAGAAGAGAAATATCAATTGGATGTCAATACAGAATCAGAATGGAATACTCATTCACAAGACATGTTTGTGCAAGTAAATAATCACGTGACAGGATGCTTTGGCTCTGAGCTTGGAAAAGTTGGATCTAGCTCTCAAAGTTCTATCCTGGGGTTAAATTGCTCTCTTCCTGAGTTTGCTGCTAAAAGGGAGCAAGTGGATGCACTTTCATATCCTAATGGAAGCATGAATGGGAGTTCTCCAATGAGCTCTCCTTCGGAGCTTGTAGAGGATAGTGTTTCGCCGAATGGGAAGTCTTCAGATAAATGCTCATCTGACAATGAAATGGATGATCTTAACCAAGAGGTTGTTCTATGTCCCGATTATATTATATATGGAGATTCTTACTGTACCAGTTCGCAGTTAACCTTTTCACATAATGGCGTCAAAATTAATGGTTTTTCTGATTATGGAAGCAACGAGTTCCTTAACCTTGAATGGGGAGTTGATGATCTCATTAATATTGAGTGTCATTGGTTTCAAAGGGTTGAATTTGTGACGATTAAGCTCCATACTATATCAAAGGATGTTGGTCAACGTGATAATGCATGTGACACTTCTGGCCTTAAGGAAGTGAAGATTGTTCTAGTTGATCCTTGCTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTTGATGTGGGCGATGATGATTTGGGTGGACCAAGACAATATTTCCCCAACTTTGATGAGCATTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCCGTTTCCATTAGTAAGAGGGATGTTGACTTGTTGCAACCAGAGACATTTGTCAATGATACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGACCCTAAGGAGAAGCATAGATTTCACTTCTTCAATAGCTTTTTCTTTAGGAAGCTAGCTGACCTTGATAAAGATCCCTCAAGTGCTTCTGATGGCAAAGCTGCTTTTCTTCGTGTTCGAAAATGGACTCGGAAAGTGAATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAACCTTCATTGGAGCTTAATGGTCATATGCCATCCTGGTGAAGTGGCTAGATATAGCGATGAAAACCTGATGAAGTCAACAAAAGTACCGTGTATATTGCATATGGATTCTATTAAGGGAAGTCACGCAGGCCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAACGAAAGAAACAAGGATGCATCTGAAGATATTTCATCAAAGTTTAAGAACCTTCGGTTTCTCCCACTCGAGCTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTATTTTTGCTCCACTATCTAGAACTCTTTTTGGCAGAAGCTCCTCTTGATTTCAGTCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCTTACCTCAAGCGAACTTTAATACAGAGATTAATTTTTGAAATCCTTGAAAGACGATCTCGAGAAATGTCCACCACTGCTTGCAGTGATGATCTCCTTTCTAAATTTCCATCAAATAATGAGGATGAAGCTGGTGTGGAGCTTGTTCCGGAAAGTGGAAGACTGGCAGAGACATTCAATCACAATTTGTCAAGCTCACAAGCTGCTGATGGGATTGAAATTACTCTGTTATCTGAATCTTCGAGTAGACATAACCACTTTATCGACGGTTCTGGCTTGGTTGTCAGAGAACTATTTGAACCAGGCACATCGAATGGATCATTACTTGGACACTATCAATCTTTTGCCCAGACATCATCGTATTTTGATACAAATGTTACCGTGCTGGAGGAAGATGCAGATACGGAAACTGGAGACCGTTTCATGTACTTGCCTTCAGAACAGGATGGTTTGCAGCCAGTCGATGCAATGACATCTCAAGCTTGTCGTTTTCCGGGTTCGTCAAGAGGCCTAGAATCCGAGACTGCTTTTGACTTGTGCATGTCTATTCAACCAGAGCATGGTAGTGGCATTGCCTCATCCCCTTCAAGTCACTCAGATGTCTTAGAAGATGTGGGAATCATTGAAAGTTGCGATGTTAGGGAACCAAGCCCTGGTAACAAAGAAGAAATTAACAGAAAAAGGCCCTTACCAATTGAGAACCTGGAACCTATAGCAGAATGCCCTACTTCTGCTGCTACCACGACGCAAGATACCGACACCATTGTCGTTTCTAAAGATACTAATGATACTTGTGAAGACATGGAAAATGATGGTTCTGATCCTCATTGTAAAGAAACTGTCGTTGCATCAACGTGTCTAGATGAGGATATAACAACCAAAACAGACATCGAACATGATGATGCAGTGTTGGTTGCTTCGGTTACTGAGGTCGACTTACACGAGCAACCTCCAGCCAAGAAATCGAGGCGTTTGCCATACCCCGAAGAAGCAAGCAACGGTCTCGGAGACGTTCTGCTAGAGGATGCAGACTTATAA 2781 41.1 MNDASVKGLEVFDFTEEDELPELISEKCLSKFKNPNLETNSVLKYGCLELGKEVENPHMDVDLDECNRGCDNGISHIPPGISKEQLIMEEEKYQLDVNTESEWNTHSQDMFVQVNNHVTGCFGSELGKVGSSSQSSILGLNCSLPEFAAKREQVDALSYPNGSMNGSSPMSSPSELVEDSVSPNGKSSDKCSSDNEMDDLNQEVVLCPDYIIYGDSYCTSSQLTFSHNGVKINGFSDYGSNEFLNLEWGVDDLINIECHWFQRVEFVTIKLHTISKDVGQRDNACDTSGLKEVKIVLVDPCWSEKQQKIRSLDSRYMAIWNMSLDVGDDDLGGPRQYFPNFDEHFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGKAAFLRVRKWTRKVNLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDENLMKSTKVPCILHMDSIKGSHAGLKNLIQSYLLEEWNERNKDASEDISSKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILERRSREMSTTACSDDLLSKFPSNNEDEAGVELVPESGRLAETFNHNLSSSQAADGIEITLLSESSSRHNHFIDGSGLVVRELFEPGTSNGSLLGHYQSFAQTSSYFDTNVTVLEEDADTETGDRFMYLPSEQDGLQPVDAMTSQACRFPGSSRGLESETAFDLCMSIQPEHGSGIASSPSSHSDVLEDVGIIESCDVREPSPGNKEEINRKRPLPIENLEPIAECPTSAATTTQDTDTIVVSKDTNDTCEDMENDGSDPHCKETVVASTCLDEDITTKTDIEHDDAVLVASVTEVDLHEQPPAKKSRRLPYPEEASNGLGDVLLEDADL 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1110312 1118841 + Carg22514-RA Car12g00180 157796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00180 926 MobiDBLite consensus disorder prediction 893 926 - -
Car12g00180 926 ProSiteProfiles Ubiquitin-like protease family profile. 358 552 IPR003653 GO:0006508|GO:0008234
Car12g00180 926 Pfam Ulp1 protease family, C-terminal catalytic domain 373 562 IPR003653 GO:0006508|GO:0008234
Car12g00180 926 MobiDBLite consensus disorder prediction 158 190 - -
Car12g00180 926 MobiDBLite consensus disorder prediction 158 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00180 K08596 SENP7; sentrin-specific protease 7 [EC:3.4.22.68] - csv:101206097 1365.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01760 Car-Chr4:10083565 Car12g00180 Car-Chr12:1110312 8.94E-29 dispersed
Car08g01103 Car-Chr8:7492261 Car12g00180 Car-Chr12:1110312 3.11E-07 dispersed
Car12g00180 Car-Chr12:1110312 Car18g00733 Car-Chr18:8446608 6.08E-39 dispersed
Car17g01076 Car-Chr17:8357690 Car12g00180 Car-Chr12:1110312 1.42E-06 transposed
Car18g00208 Car-Chr18:1181840 Car12g00180 Car-Chr12:1110312 9.24E-13 transposed
Car12g00180 Car-Chr12:1110312 Car05g00494 Car-Chr5:2850628 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g511 . . . . . . . . . Cmo12g00152 . . . Car12g00180 . . Cpe07g00168 . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01358 Bpe02g01149 . . Bma02g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001964 1 5 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 2 2 1 3 5 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00180 Car_Chr12 FPKM 137.035248 148.260925 260.902039 265.905548 16.68943 15.36841 14.298274 10.277425 8.830357 9.196445