Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00181 ATGGTTCATGCTGGTTCTACCCAATTTTCACATAAACTGGGGATTCAAAGCGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCCGGCTACATCTTGTTACTATCATTCCTACGTCACACGATCTGAGGTATGATCCTGGACGTCTTCAGCTCTTACGCAGTGCAAGTCGGCCAGTGTATCCCATGTCTTCCAGAGCAAATGTTTTGGTGTGTCGATCTGTTCTTGAATCAAGTGGTGGAGGAGCTGGGACTGCTGTTCTAAAAACTGCAGCTTTGGTGCTGACAAGATCTTATGATGCTTTACGCGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGCGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGGTTCTATTTCTTCATGAGCCCGATGGCAGTTGGAAGAAAAGTAATGCATACTATGTTACGACTTCCTACGTTCAGCCTTTACTGCTATGGATGGGAGCCACATTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCGTCAGTAGCCAGTCAGGCCATCAAACAGCGACTTCTAAATTTTGTTCGAGCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACGGAATCAAATGACTCAAGTGATGCTAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTCACAGCTGGGGGTCTTGGTACCGTATTACTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTCTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACTATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACCGTTAGTATTGTGAGAAATCTTACTCAGAAGACTCATTGGCGTATCAAAACTCATCTTGCCATCAGCCACTTAGATGTCAACAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATCTTCTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGGAGGCAATTCTCTTGGACCTTCTCAGGGTTATCAGCCACCATAGGGCCCGGCTTGCCACTCCCATACGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTACAGGGGCTACTAACCGCCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGCGACGATAAAGCCAAGGTCTCTGGACGTCCCGCTCGCTCATCAAGCGAAGAAAAGGATGCCAAACAAGAGGCAGTCTCAACATCAGGAATGAAAGCCCCCGACACATCCGGAACATCACCTAAGCCTTCAACTGGATTGGTATCCAACACACAGACCCAGAATCCAACCAGTACTCCAGAACAAAGCAGCATTGAGAAGCCAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGATCTCACAGGACTGAACGCTAAGGATAATACGCCACGAGGGACTCCTCCCAAATGGTCGCCCTCAGCTGCCGGTCCGAGTAGCGAGAAAGCTGATATATCTTCCTCAAGCGTGCAGAATAAGCAAGATGGCGAGAAGACCCCTGTGAGCAGACCTCCATTGGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATAGAGGAAGATCTGAATCCATCTCCCTTTCACTCTCCAGCTGATACAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTGGTCCAAAGAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGGTACAAAAAGTGATTGA 2037 45.21 MVHAGSTQFSHKLGIQSVHGCNKLHISGKGKTRLHLVTIIPTSHDLRYDPGRLQLLRSASRPVYPMSSRANVLVCRSVLESSGGGAGTAVLKTAALVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRVLFLHEPDGSWKKSNAYYVTTSYVQPLLLWMGATLICRALDPVVLPSVASQAIKQRLLNFVRALSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKAKVSGRPARSSSEEKDAKQEAVSTSGMKAPDTSGTSPKPSTGLVSNTQTQNPTSTPEQSSIEKPVTSNEVKGEKKDLTGLNAKDNTPRGTPPKWSPSAAGPSSEKADISSSSVQNKQDGEKTPVSRPPLEENIVLGVALEGSKRTLPIEEDLNPSPFHSPADTKEISTQRNGSEFGPKSKDMKDGQMPAVPGGTKSD 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1119626 1124922 - Carg22513-RA Car12g00181 157797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00181 678 MobiDBLite consensus disorder prediction 477 502 - -
Car12g00181 678 MobiDBLite consensus disorder prediction 477 678 - -
Car12g00181 678 MobiDBLite consensus disorder prediction 641 656 - -
Car12g00181 678 MobiDBLite consensus disorder prediction 548 562 - -
Car12g00181 678 MobiDBLite consensus disorder prediction 506 547 - -
Car12g00181 678 Pfam Mechanosensitive ion channel 240 406 IPR006685 GO:0016020|GO:0055085
Car12g00181 678 MobiDBLite consensus disorder prediction 583 602 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00181 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1126.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00181 Car-Chr12:1119626 Car16g00778 Car-Chr16:4963208 0 dispersed
Car12g00181 Car-Chr12:1119626 Car05g00491 Car-Chr5:2839254 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g514 . . Bda01g00910 . . . . . . . . . . Car12g00181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00115 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00782 . 149 532 Mechanosensitive Ion Channel Family AT4G00290 69.3 2.0e-153 539.7
Car16g00778 . 24 748 Mechanosensitive Ion Channel Family AT5G10490 54.0 2.1e-193 672.9
Car05g00491 . 10 730 Mechanosensitive Ion Channel Family AT5G10490 53.1 3.2e-186 649.0
Car12g00181 . 61 667 Mechanosensitive Ion Channel Family AT5G10490 57.7 5.1e-184 641.7
Car05g00491 . 10 710 Mechanosensitive Ion Channel Family AT1G58200 55.3 1.5e-196 683.3
Car12g00181 . 10 632 Mechanosensitive Ion Channel Family AT1G58200 55.5 4.2e-178 622.1
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G53470 54.9 6.6e-200 694.9
Car20g00632 CCT 50 778 Mechanosensitive Ion Channel Family AT1G78610 57.3 4.9e-216 748.4
Car20g00632 CCT 229 778 Mechanosensitive Ion Channel Family AT2G17000 58.6 2.5e-172 603.2
Car11g01388 CCT 270 862 Mechanosensitive Ion Channel Family AT2G17000 52.3 3.3e-172 602.8
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G19520 51.5 2.2e-79 294.3
Car10g00675 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.6 2.9e-201 699.1
Car01g01323 . 1 297 Mechanosensitive Ion Channel Family AT5G12080 59.4 6.9e-94 342.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00181 Car_Chr12 FPKM 0.506819 0.540025 3.107064 3.056285 6.512421 5.66708 6.135779 5.080139 3.847941 4.845013