Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00185 ATGAAGCTTAAGAAACGATCTGTCAGCGAGAAAGACATTTCCACTTTCCTTCCGAGGTATTCTCCGACGACGGTGCTGACGTTGTTACAAGAAGTGTCACAAGTTTCGGAAGCGAAGCCGAAGATTGATTGGAACGAGATAGTTAAAAACACTTCGACCGGAATTTCTAATCCTCGGGAATATCAGATGCTATGGCGGCATTTGGCTTATCGTCATGCGTTGCTTGATAATTTGGAAGACGAGACGGCACCTTTGGAAGATGACAGTGACTTGGAGTGCGAATTGGAGCCGTTTCCATCGTTCAGCTGCGAAACTTCGACGGAGGCTGCGGCGTGTGCGAAGGTATTTATCGCTTCTGGTTCTTCAAGTCACTTGAGCCTTCCAAGCAGTAGCACAATAGAGGCTCCATTAACTATTAACCTACCGAGAAGTTACATGGCTGGGGTTCAGTTCGAAGATGCAGACCCTGCTTGCTCTATAAGAGGTGCGAGCATCACAGTGCCTGTTTCTGTTCAGCGACAGCCGGTCCTTACCCCACCATCTGCCGAAGGATTGACCACAAATGGATCAACGTATGGCAATAATGCATCTCGAAGGAAAAGAAAACCTTGGTCCGAGGCAGAGGATCTTGAGTTGATGGCTGCAGTGAAGAAATGCGGTGAAGGGAATTGGGCAAACATCTTACGTGGCGACTTCTTGAGTGATCGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAAAAAGAGACACGGAAATTTGAATGTGGGAGCCAACACGGCTGGTACACAGCTATCTGAGGTGCAGCTGGCAGCTCGTCATGCAATGTCTTTAGCTCTTGATAGGCCAGTTGGTAGCTTGAAAGCAGCTCGAATAAGTGGCTCAGCCAGTACAAATACGATAGGTAATGGTAGCTCGCTTGCTCCCGTTGCCTCGTCTGAACAAGTGCAAGATAAATTACATCAAAGCCCTACTCATACAAAACCACATCCAGTTGGATCATCAAGTCTAACAGCCAAAGCTCAAGTTACCGCATCCAAGAAGATGATTCCTAAGTCTTCTTTTGATTCAGACTGTATTGTTAGAGCTGCTGCTGTTGCTGCTGGAGCTCGCATTGCTTCACCGGCAGATGCTGCATCTTTACTCAAGGCTGCTCAGTCAAAGAATGCCATCCATATAATGGCCAAAGTCCCTGCTTCAACCAAAACACCCACTCCTGCCCGGGGGCCAAACCATTTAGAAGCTCATCCTAGTATTAAGACCACCACCCTTCCCAACACTTCTGCAGTCATGCCATCTGTTACTCACAGCGGGGGCCCTGTGAAGATCACGTCTTCAACAACTGCTACATTATCGAGTGTGCCAACGGACCAGAATATTTCTGTAGCCTCTGTCACAGCAGCTGCTAATCCATTGTCAGAAAAGGAAACCAAGACAACAGAAGAAACTAGAGGTCTGGGTTTAGGTGGTGTGCAGGCCACAGCCCAAAAGGATTGTCGTTCCAGGCAATCGATATCTGAGAGAGTTCAAGAAGAAAAGCCAGCTGACTTAGGACCACCTTTGAAAAGGCAAGCTACTGAGACTAGTAATTGCAGTAGCTCACAAAACACGTCAACAGCCGATGTTGATATTAAAGTTGAAACTGGCAATCAGGTAGAAGAGAGACAAAACGCTAATACCAGTATGATTCCCGATTCCTCGAGTCAGTCACAGGTTGAGAGAACGAAACTGCAGGATATGGACATCGACAATGATGGAAAGGATAGGCCAATCATGAAAACAGATGGACGTAGCGAAAATTCAGTGCACAAGGAGGCTGCAAGCGAGATTTCGAAGGGAAACACCAAGGATACAAACTAA 1863 46.91 MKLKKRSVSEKDISTFLPRYSPTTVLTLLQEVSQVSEAKPKIDWNEIVKNTSTGISNPREYQMLWRHLAYRHALLDNLEDETAPLEDDSDLECELEPFPSFSCETSTEAAACAKVFIASGSSSHLSLPSSSTIEAPLTINLPRSYMAGVQFEDADPACSIRGASITVPVSVQRQPVLTPPSAEGLTTNGSTYGNNASRRKRKPWSEAEDLELMAAVKKCGEGNWANILRGDFLSDRTASQLSQRWAIIKKRHGNLNVGANTAGTQLSEVQLAARHAMSLALDRPVGSLKAARISGSASTNTIGNGSSLAPVASSEQVQDKLHQSPTHTKPHPVGSSSLTAKAQVTASKKMIPKSSFDSDCIVRAAAVAAGARIASPADAASLLKAAQSKNAIHIMAKVPASTKTPTPARGPNHLEAHPSIKTTTLPNTSAVMPSVTHSGGPVKITSSTTATLSSVPTDQNISVASVTAAANPLSEKETKTTEETRGLGLGGVQATAQKDCRSRQSISERVQEEKPADLGPPLKRQATETSNCSSSQNTSTADVDIKVETGNQVEERQNANTSMIPDSSSQSQVERTKLQDMDIDNDGKDRPIMKTDGRSENSVHKEAASEISKGNTKDTN 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1144523 1150126 - Carg22509-RA Car12g00185 157801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00185 620 MobiDBLite consensus disorder prediction 502 519 - -
Car12g00185 620 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 253 IPR017930 -
Car12g00185 620 MobiDBLite consensus disorder prediction 304 338 - -
Car12g00185 620 MobiDBLite consensus disorder prediction 577 620 - -
Car12g00185 620 Pfam Myb-like DNA-binding domain 201 245 IPR001005 -
Car12g00185 620 MobiDBLite consensus disorder prediction 524 576 - -
Car12g00185 620 MobiDBLite consensus disorder prediction 491 620 - -
Car12g00185 620 ProSiteProfiles Myb-like domain profile. 196 245 IPR001005 -
Car12g00185 620 MobiDBLite consensus disorder prediction 177 198 - -
Car12g00185 620 MobiDBLite consensus disorder prediction 177 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00185 - - - csv:101206820 877.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car09g00526 Car12g00185 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00185 Car-Chr12:1144523 Car05g00486 Car-Chr5:2811028 0 wgd
Car12g00185 Car-Chr12:1144523 Car09g00526 Car-Chr9:2954886 1.88E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g521 . . Bda01g00909 . . . . . . Cmo12g00157 . Cma09g00595 . Car12g00185 Sed04g0197 Cpe06g00456 Cpe07g00173 Bhi04g01388 Tan02g2476 Cmetu03g1900 . Hepe10g0434 . Lcy13g1484 . . . . . . . Cone4ag1295 Cone7ag0860 . . . . Chy04g00204 . . . . . Bpe02g01148 Bpe14g00483 . . Sed13g1535 . Cmo09g00581 Cma12g00203 . . Car09g00526 . . Bhi09g02501 Tan01g3854 . . . Mch11g0711 . Cla11g01427 Cam11g1483 Cec11g1513 Cco11g1509 Clacu11g1644 Cmu11g1462 Cre11g1880 . . . Cme04g00235
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005998 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4381 PF00249 Myb_DNA-binding 4.10E-07 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00185 Car_Chr12 FPKM 290.490784 323.337372 84.591858 87.120827 50.646233 51.222275 48.949196 140.078979 154.460983 146.209564