Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00187 ATGTATATTCTCAGTGAACGCATGAGCCATGCTTTTGTTTCAGGTTATGGTCTTGACTCTGGAAAATGCGGCAGCAAGATTAGTATGGAAAAGAAAAAGGAAATAATCCATGAGATTGCCCGGAAGTCCAAATCCGCACCTGAAATCCTTAGGTCTCTTACTCGAAGTGATTTACTGGAGATCATCTGTGCTGAAATGGGGAAAGAAATGAACTACACTGGATATTCAAAAGCTCAAATGATCGAGTACCTTTTGAAGCTGGTCTCTCAGAAATCCGACAGAGGTAATACTCATGCATCTTTACTAGACAAAGCTCAAACTGGCCACAAGAGGCCTCGAAACACGAACCGAACATCTGTTCAACTCTTGGATTCGAATAATACTTCCATGGAGACTGATGAGGAAAGTGTTGAAGTCAAACTTTGTCGGAATGTGGCTTGCAAAGCACCTCTAAATCCAGAGTTTGCTTTTTGCAAGAGATGTTCATGTTGCATTTGCCATTGTTACGATGATAACAAGGATCCAAGTCTTTGGCTGACCTGTGGCTCTGACCCTTCTAATGAGAACGATTCTTGTGGAATGTCATGTCATTTGGAGTGTGCCCTGAAGCATGAAAGGACTGGAATTGTGAAGAATGGTCTCTGTGAAAAATTAGATGGAAGTTTTTACTGCGTCTCATGTGGAAAGATCAATGGATTGATGGGAAGTTGGAGAAGACAACTGGTAAATGCAAAGGAGGCCAGAAGAGTGGATGCATTATGTTTAAGACTATCCTTGTGTCACAAGATTCTTGTAGGGACAAATCTATACAAAGAAGTGCACAAGACAGTAGAGTTGGCCATGAATATGATGACAAATGAAGTGGGACCCTTAGATGAGGTTTGCTTGAGGATGGCAAGAGGCATTGTCAACCGGCTATCCTGTGGTGCGGAGGTCCAGAAGCTGTGTGCTTCTGCTGTGGAGGCCTTTGATTCCATGTGTTGTGTCCCTTGCGTGGATGGTATGCAAAAGAGAGAATCATTGGACTGCGAGATCCTATTTGAAGATTCTTCACCTACCTCGGTGATGGTCGTGCTCCGATATGATGATCATGTGTTAAGGGACTTCTTAGGCTGCAGGCTTTGGTATCGTAAAGCTAACATGGAGGATTATCCAGACCAGCCATCTTTCATTGCATTGAAGCCAGAAAAAAACTTTAAGATCACTGATCTTTCCCCTTCAACCGAGTACCACTGCAAGGTCTCTTTATTTAGTAGCACACAAGTTTTTGGTGTCTGGGAAGCCAAATGGGTCACGCCGAAATTATCGACGCCGTGTCCAGCTTTAGAGAAGCATAGAAATGGAGAAATTAAGAACACTAATCTACTTCATTCTCAGGTGGATTCGAAAAACAACCTGATTAATCTTCACTCATTGGATGGACTTGACAAGAGGAGGCTTTACAAATATCCCTCTCTAAAGAACTCAATCACTTCGATGAAATCGATATCAGTTTGTCCTTCAACACCTTGTAAATTAACCGAAATGCGCATCATGCTCGGTTTTAATTGCACAAGGCGAACTGAAGAGTCCGACTACGATTATTCTGTTAGAATGGTGAAATGGCTAGAGCATGAAGGCCACATTGACGTAGATTTTCGAGTCAAGTTCCTAACTTGGTTCAGCTTGAAAGCATCAGTGAAAGACCGAAGAGTTGTTAGTGCTTTTATCGACGCTTTGATCGACGACCCACCAAGCTTGGCGGGACAACTAAGCCACACCTTCATGGATGAGATCTTCTGTAACCAAAAACCAGTTCCCAAGCATGAATACTGCAATTGGATATGTCGTTAA 1833 42.72 MYILSERMSHAFVSGYGLDSGKCGSKISMEKKKEIIHEIARKSKSAPEILRSLTRSDLLEIICAEMGKEMNYTGYSKAQMIEYLLKLVSQKSDRGNTHASLLDKAQTGHKRPRNTNRTSVQLLDSNNTSMETDEESVEVKLCRNVACKAPLNPEFAFCKRCSCCICHCYDDNKDPSLWLTCGSDPSNENDSCGMSCHLECALKHERTGIVKNGLCEKLDGSFYCVSCGKINGLMGSWRRQLVNAKEARRVDALCLRLSLCHKILVGTNLYKEVHKTVELAMNMMTNEVGPLDEVCLRMARGIVNRLSCGAEVQKLCASAVEAFDSMCCVPCVDGMQKRESLDCEILFEDSSPTSVMVVLRYDDHVLRDFLGCRLWYRKANMEDYPDQPSFIALKPEKNFKITDLSPSTEYHCKVSLFSSTQVFGVWEAKWVTPKLSTPCPALEKHRNGEIKNTNLLHSQVDSKNNLINLHSLDGLDKRRLYKYPSLKNSITSMKSISVCPSTPCKLTEMRIMLGFNCTRRTEESDYDYSVRMVKWLEHEGHIDVDFRVKFLTWFSLKASVKDRRVVSAFIDALIDDPPSLAGQLSHTFMDEIFCNQKPVPKHEYCNWICR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1155044 1157244 - Carg22507-RA Car12g00187 157803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00187 610 Pfam PHD - plant homeodomain finger protein 142 261 IPR032881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00187 - - - bhj:120075533 1028.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00484 Car12g00187 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00633 Car-Chr5:3806552 Car12g00187 Car-Chr12:1155044 1.61E-16 dispersed
Car11g00358 Car-Chr11:1959725 Car12g00187 Car-Chr12:1155044 9.55E-18 dispersed
Car11g00473 Car-Chr11:2589801 Car12g00187 Car-Chr12:1155044 3.57E-19 dispersed
Car12g00187 Car-Chr12:1155044 Car05g00484 Car-Chr5:2803134 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g524 . . Bda01g00908 . . . . . . Cmo12g00159 . . . Car12g00187 Sed04g0201 . Cpe07g00175 Bhi04g01391 Tan02g2472 Cmetu03g1987 . Hepe10g0437 . Lcy13g1488 Cla08g01157 Cam08g1617 Cec08g1192 Cco08g1315 Clacu08g1316 . Cre08g1101 . . Cone17ag1181 Cone20ag0550 . . . Cme03g01813 . . . . Bpe02g01146 . . . . . . Cma12g00206 Cma05g00537 Car05g00484 . Cpe11g00473 . . . . . . . . . . . . . . . . . Chy03g01316 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008507 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00187 Car_Chr12 FPKM 99.275856 103.537163 98.568611 100.183273 64.861694 75.271347 66.005646 54.842949 51.53994 51.50724