Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00188 ATGTTCTTCACAGTTCACTGTCCTTTCGCCCTTCTCGCTTTCCTGTGGAGTCCCCAAACGCAACCAACGCTCTACACTGTAACTACACACTTTGCGCGACATTTCCACATTCGATCCTCTCTTCTTCCTTCTTCTCTTCTGGTCGGCCTCGATTCCTCTGTGTTCTATCAATTCTCTTTCAGACCGTTCCTTTTTTTTTTGTTTTTTCTCAATTTCTGCAATGTGCTTCAAACACCCTTGATTTTGTTTCTGCCAGAGTTAATGTACGGCCGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGATGGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGAGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTTTTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAACTCAGAGTCAGAGGAATGCTGTGGACTTCCCCGGACGTAGTAGTCAACCGCAGAGGGCAGCATCGTTAAATCGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATACAGCCATGGTAGTGTTTCAGAGCAAGGTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGTGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGATTGTCTGGCTGATGGATATGCCAGACCTTTGCAAGGGACTTATTGGCTTTTATGATGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTCCTGCAATGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGTGACGTTATGGATGATGTCGAAGAGGCTCATATGACTTCAGTGAGCGTCGCGAACCTTGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGTGTACCCACAATGGAAGTACCATATGATCATATGAGCAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTTCGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCCAACAAGGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGTACTACTCCTCTATTTTTCTCTCATTACAAATACTCCTTCCATTTGGCTAGCTTGTGTTATCTGCAAGCCAATGCACATACAATATGCATGCAGGGAACTCCCGAGGATCCTGGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAACGATGATGAGCAGGAACCTCTTATTGAACTTCCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 2064 47.92 MFFTVHCPFALLAFLWSPQTQPTLYTVTTHFARHFHIRSSLLPSSLLVGLDSSVFYQFSFRPFLFFLFFLNFCNVLQTPLILFLPELMYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLVTQSQRNAVDFPGRSSQPQRAASLNRMQRNKGQFTSSKKPDGSYSHGSVSEQGQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRIVWLMDMPDLCKGLIGFYDGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVPAMMGDDDGEYEDGGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHMSRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHVLLLYFSLITNTPSIWLACVICKPMHIQYACRELPRILDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELPNPSDTDIDIPTNFD 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1159979 1172938 + Carg22506-RA Car12g00188 157804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00188 687 MobiDBLite consensus disorder prediction 212 262 - -
Car12g00188 687 ProSiteProfiles CCT domain profile. 474 516 IPR010402 GO:0005515
Car12g00188 687 Pfam CCT motif 474 515 IPR010402 GO:0005515
Car12g00188 687 MobiDBLite consensus disorder prediction 360 383 - -
Car12g00188 687 MobiDBLite consensus disorder prediction 649 663 - -
Car12g00188 687 ProSitePatterns GATA-type zinc finger domain. 545 572 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 Pfam GATA zinc finger 268 302 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 Pfam GATA zinc finger 545 581 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 MobiDBLite consensus disorder prediction 649 687 - -
Car12g00188 687 ProSitePatterns GATA-type zinc finger domain. 268 295 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 ProSiteProfiles Tify domain profile. 158 193 IPR010399 -
Car12g00188 687 Pfam tify domain 409 440 IPR010399 -
Car12g00188 687 Pfam tify domain 160 192 IPR010399 -
Car12g00188 687 ProSiteProfiles GATA-type zinc finger domain profile. 268 298 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 ProSiteProfiles Tify domain profile. 406 441 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00188 Car-Chr12:1159979 Car17g00597 Car-Chr17:5676352 3.28E-34 dispersed
Car12g00188 Car-Chr12:1159979 Car05g00483 Car-Chr5:2782368 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4382 PF06203 CCT 3.20E-13 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00188 - - cmax:111495925 541.962