Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00188 ATGTTCTTCACAGTTCACTGTCCTTTCGCCCTTCTCGCTTTCCTGTGGAGTCCCCAAACGCAACCAACGCTCTACACTGTAACTACACACTTTGCGCGACATTTCCACATTCGATCCTCTCTTCTTCCTTCTTCTCTTCTGGTCGGCCTCGATTCCTCTGTGTTCTATCAATTCTCTTTCAGACCGTTCCTTTTTTTTTTGTTTTTTCTCAATTTCTGCAATGTGCTTCAAACACCCTTGATTTTGTTTCTGCCAGAGTTAATGTACGGCCGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGATGGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGAGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTTTTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAACTCAGAGTCAGAGGAATGCTGTGGACTTCCCCGGACGTAGTAGTCAACCGCAGAGGGCAGCATCGTTAAATCGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATACAGCCATGGTAGTGTTTCAGAGCAAGGTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGTGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGATTGTCTGGCTGATGGATATGCCAGACCTTTGCAAGGGACTTATTGGCTTTTATGATGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTCCTGCAATGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGTGACGTTATGGATGATGTCGAAGAGGCTCATATGACTTCAGTGAGCGTCGCGAACCTTGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGTGTACCCACAATGGAAGTACCATATGATCATATGAGCAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTTCGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCCAACAAGGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGTACTACTCCTCTATTTTTCTCTCATTACAAATACTCCTTCCATTTGGCTAGCTTGTGTTATCTGCAAGCCAATGCACATACAATATGCATGCAGGGAACTCCCGAGGATCCTGGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAACGATGATGAGCAGGAACCTCTTATTGAACTTCCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 2064 47.92 MFFTVHCPFALLAFLWSPQTQPTLYTVTTHFARHFHIRSSLLPSSLLVGLDSSVFYQFSFRPFLFFLFFLNFCNVLQTPLILFLPELMYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLVTQSQRNAVDFPGRSSQPQRAASLNRMQRNKGQFTSSKKPDGSYSHGSVSEQGQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRIVWLMDMPDLCKGLIGFYDGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVPAMMGDDDGEYEDGGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHMSRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHVLLLYFSLITNTPSIWLACVICKPMHIQYACRELPRILDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELPNPSDTDIDIPTNFD 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1159979 1172938 + Carg22506-RA Car12g00188 157804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00188 687 MobiDBLite consensus disorder prediction 212 262 - -
Car12g00188 687 ProSiteProfiles CCT domain profile. 474 516 IPR010402 GO:0005515
Car12g00188 687 Pfam CCT motif 474 515 IPR010402 GO:0005515
Car12g00188 687 MobiDBLite consensus disorder prediction 360 383 - -
Car12g00188 687 MobiDBLite consensus disorder prediction 649 663 - -
Car12g00188 687 ProSitePatterns GATA-type zinc finger domain. 545 572 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 Pfam GATA zinc finger 268 302 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 Pfam GATA zinc finger 545 581 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 MobiDBLite consensus disorder prediction 649 687 - -
Car12g00188 687 ProSitePatterns GATA-type zinc finger domain. 268 295 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 ProSiteProfiles Tify domain profile. 158 193 IPR010399 -
Car12g00188 687 Pfam tify domain 409 440 IPR010399 -
Car12g00188 687 Pfam tify domain 160 192 IPR010399 -
Car12g00188 687 ProSiteProfiles GATA-type zinc finger domain profile. 268 298 IPR000679 GO:0006355|GO:0043565
Car12g00188 687 ProSiteProfiles Tify domain profile. 406 441 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00188 - - - cmax:111495925 541.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00188 Car-Chr12:1159979 Car17g00597 Car-Chr17:5676352 3.28E-34 dispersed
Car12g00188 Car-Chr12:1159979 Car05g00483 Car-Chr5:2782368 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car17g00183 CST 1 180 Tify Gene Family AT4G14713 52.1 4.0e-45 178.7
Car08g01006 CST 1 180 Tify Gene Family AT4G14713 52.1 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4382 PF06203 CCT 3.20E-13 CL0281 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00188 Car_Chr12 FPKM 8.714268 4.648662 10.965771 8.505501 4.766 2.626787 5.501745 2.399488 4.246879 6.263827