Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00194 ATGCCGCCACTGGGTGTGCAACTCTCCATTGCAGAACATCAGGTGACAATGGACAATGGCATAGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCTGCAACTGGATCGTTTGATGTGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTATTGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTGGTCGACCCCATCGAATCCGAGCTTCAGGGAGAGGTGGATGACAAGTATCAATATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACCACTCTTGCTGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCGTGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCTAGCGACGCACTTCAGCTCTGGGAAGATGGCAAATCACAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAAACTATTAGTCAAAGATAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTTTCATCGACCACGTAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTTATCGGAGATTATCGTTACAATTCTATCATCAACATATTAGAAGGTAGTCAGATAGACGTGGATGAGATAATATACGAGCCTCCAAGAGCAGGGGCGACACTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCCGATAAGTTTCGCCAGTATGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGACAGCCAAGCAACTTACAAGCTTCGGGTCGCACTGGCCTCCGCTTCTATCGCGGAATTGCAGGTTGTAGTAAATGACCCGAAAGCAAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCGATCGCTAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCGCCTCCGTCCTCCGCCCATGGTTCGTTATAA 1926 49.17 MPPLGVQLSIAEHQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLLIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELQGEVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGKLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFFIDHVRPGDYNLYAWVPGFIGDYRYNSIINILEGSQIDVDEIIYEPPRAGATLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIAELQVVVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGSL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1225621 1230610 - Carg22500-RA Car12g00194 157810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00194 641 Pfam Rhamnogalacturonate lyase family 7 201 IPR010325 -
Car12g00194 641 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Car12g00194 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car09g00530 Car12g00194 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00798 Car-Chr4:4620517 Car12g00194 Car-Chr12:1225621 0 dispersed
Car04g01242 Car-Chr4:7163961 Car12g00194 Car-Chr12:1225621 3.29E-106 dispersed
Car03g00493 Car-Chr3:5101912 Car12g00194 Car-Chr12:1225621 0 transposed
Car12g00194 Car-Chr12:1225621 Car03g00778 Car-Chr3:6488716 0 wgd
Car12g00194 Car-Chr12:1225621 Car07g00516 Car-Chr7:2605890 0 wgd
Car12g00194 Car-Chr12:1225621 Car09g00530 Car-Chr9:2983546 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00194 K18195 - csv:101215720 1192.18