Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00196 ATGGCGCCTAGTTTTGACCTTGCAGTTACCAATCTTTTATGCGCTGAAGAAAATTGTATTTTCGATGATAACGATGATGACGACTGTCTGGTCGCTCCTTATGTTCTTACGAGTAATGGGTTTCAGAGTTGGCGTCACGGCGGCGGTCACGGCGGCGATGGGTTTCCGTTTACAAGCGATGAATGTTTGATTGAAATGGTGGAGAAGGAAACCCACCACTTGCCTGTTGATGGGTATCTCATGAAATTGCAAAACGGCGAGTTGGATGTCGGGGCTAGAAAAGATGCTGTCGATTGGATTGAACAGGTGAGTGCTCGTTTCAATTTTGGTCCTCTCTGCACATACTTAGCCGTAAACTACATGGATCGATTCCTCTCCGCTTACACTCTACCAAAAGGCAAAGCTTGGACAATGCAGCTACTGGCAGTGACATGTCTGTCTCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCAATCTCGTTGGATTTACAGGTGGGTGGATCTAAATTTGTGTTTGAAGCAAGAACCATAGAAAGAATGGAGCTTTTAGTGTTGACAACATTAGGGTGGAGAATGCAAGCCGTTACGCCATTCTCGTTTATCGATCATTACCTCGGCAAGATCCATCACGACGACAAGACATCGATCACCCGTTCGATTCGTTTACTATTGAACATAATTCAAGGGATCGAGTTCTTGGAATTCAAACCATCCGAGATTGCCGCAGCAGTGGCAATATCAGTAGCTGGAGAAGGTGAAGAGACAGCAATTCCTCTTCTAATTCAGCAGAAACTCCACATGGAAAGAGTAGTGAAGTGCATTAAGTTAGTGAAGGAGATGTTGGGGAAGACGGAGGAGGAGGAGTCGAGGTCGATGTCGGAGGGGCCGCAGAGCCCGAGCGGGGTATTGAACGTGAGGTGCTTAAGCTATAAAAGCAATGAAAGTACAGCAGTTGGGTCATGTGCAAATTCCTCTTCACATCATAACAGTTCAAATGGTTCAAAGAGGAGGAGATTGAACAGAGCCTGTGAAGTGGAGCTTTAG 1044 46.17 MAPSFDLAVTNLLCAEENCIFDDNDDDDCLVAPYVLTSNGFQSWRHGGGHGGDGFPFTSDECLIEMVEKETHHLPVDGYLMKLQNGELDVGARKDAVDWIEQVSARFNFGPLCTYLAVNYMDRFLSAYTLPKGKAWTMQLLAVTCLSLAAKLEETEVPISLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLGKIHHDDKTSITRSIRLLLNIIQGIEFLEFKPSEIAAAVAISVAGEGEETAIPLLIQQKLHMERVVKCIKLVKEMLGKTEEEESRSMSEGPQSPSGVLNVRCLSYKSNESTAVGSCANSSSHHNSSNGSKRRRLNRACEVEL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1241291 1242987 + Carg22498-RA Car12g00196 157812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00196 347 MobiDBLite consensus disorder prediction 317 341 - -
Car12g00196 347 Pfam Cyclin, C-terminal domain 195 294 IPR004367 -
Car12g00196 347 Pfam Cyclin, N-terminal domain 66 192 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00196 Car-Chr12:1241291 Car16g00277 Car-Chr16:1723405 6.09E-53 dispersed
Car12g00196 Car-Chr12:1241291 Car03g00762 Car-Chr3:6407386 8.12E-88 wgd
Car12g00196 Car-Chr12:1241291 Car05g00478 Car-Chr5:2720856 1.68E-144 wgd
Car12g00196 Car-Chr12:1241291 Car07g00501 Car-Chr7:2508069 6.02E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00196 K18810 - csv:101216206 478.018