Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00206 ATGATGGCATTGGAAACGGTGGTTTACCCACAAAATAGAGATACATTTACTTATGTTTGCAGAGATTTCTGTTCTTACGGCGGCGCTTGGCCTGGCTATGACTATGGCTTCCAATTAGAACAAGAAAAATCCTTTCTTGAAAACCCCCAAAAACTCCCCACTAATTGGGAGCCTTCACCGGAGGAATGTTCGATCAAACAGCCGCTTTCCGTAGGAGCTCTCTATCCGCCGATGGAAGTTGAACAGTCGCCACCGTCGCCACCGTCCCCACCGCCGACGACCGGGAGGAGAAAGCGACGGCGGACTCGAAACATGAAAAACAAGGAGGAAATTGAAAACCAGAGGATGACCCACATCGCCGTCGAGCGCAACCGCCGGAAACAAATGAATGAATATCTCGCCGTCCTCCGATCACTAATGCCGTGTTCTTACGTTCAAAGGGGAGACCAAGCCTCCATTATTGGTGGCGCCATTAATTTCGTCAAGGAATTAGAACAGCAATTACAGTTCATCAAAGCCCATAAGGAACCAACAGCGTCATCCCCTTTTGCCGACTTCTTTTCCTTCCCACAGTTCTCAACTCCGGCGACGAACTCGACCCATGACTCTGCCAGTTCCAACACCCAATGGGCCGCCGGAGATATCGAAGTCACCATGGTGGATACCCATGCCAACCTCAAAATCTTGTCCAAGAAACGCCCGAGACAGCTCCTCAAAATGGTGGCAGGGTTTCAAAGCTTGAGATTCTCTGTTCTTCATCTCAACGTCACCACTTTGGATCAAATGGTTCTTTACTCTGTAAGCATCAAGATTGAGGAAGGATGCGAGTTGAATACAGTGGATGAAATCGCTGCAGCTGTGAATCAAATCCTGCTCTCCATTCAAGAGGAATCTGCTTTCAGCTGA 906 48.79 MMALETVVYPQNRDTFTYVCRDFCSYGGAWPGYDYGFQLEQEKSFLENPQKLPTNWEPSPEECSIKQPLSVGALYPPMEVEQSPPSPPSPPPTTGRRKRRRTRNMKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPCSYVQRGDQASIIGGAINFVKELEQQLQFIKAHKEPTASSPFADFFSFPQFSTPATNSTHDSASSNTQWAAGDIEVTMVDTHANLKILSKKRPRQLLKMVAGFQSLRFSVLHLNVTTLDQMVLYSVSIKIEEGCELNTVDEIAAAVNQILLSIQEESAFS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1299052 1300495 + Carg22488-RA Car12g00206 157822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00206 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 164 IPR011598 GO:0046983
Car12g00206 301 MobiDBLite consensus disorder prediction 76 111 - -
Car12g00206 301 Pfam Helix-loop-helix DNA-binding domain 114 165 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01164 Car-Chr1:10794794 Car12g00206 Car-Chr12:1299052 3.04E-71 dispersed
Car12g00206 Car-Chr12:1299052 Car12g01056 Car-Chr12:10368142 4.30E-65 dispersed
Car16g00063 Car-Chr16:411915 Car12g00206 Car-Chr12:1299052 1.56E-31 dispersed
Car06g01234 Car-Chr6:8927838 Car12g00206 Car-Chr12:1299052 5.65E-43 transposed
Car14g01693 Car-Chr14:13466480 Car12g00206 Car-Chr12:1299052 5.36E-50 transposed
Car12g00613 Car-Chr12:4150865 Car12g00206 Car-Chr12:1299052 1.25E-55 transposed
Car12g00206 Car-Chr12:1299052 Car04g00791 Car-Chr4:4568583 5.41E-54 wgd
Car12g00206 Car-Chr12:1299052 Car05g00466 Car-Chr5:2652809 8.01E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4384 PF00010 HLH 9.40E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00206 - - cpep:111786185 452.981