Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00209 ATGGTGATGCCCGAGTCGTCTGAACGCCACCGGACAGCGTCTCGTCGAGCGAATCAACCGCAACTTGGAGCTAGGGTTCCGCTCAAGCGGTTACTTCGCGTGGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATGTTCAAGAGCTTGGTATTCCTCATGCTTGGTCAAGTCTCATATGGCTCTGCGGACCGCTTTCTGGCCTCTTTGTCCAGCCTCTCGTTGGCCACATGAGCGATCGCTGCACCAGCCGATACGGCCGCCGGAGGCCATTCATTGTAGCTGGAGCGCTTTCCATTGTACTCGCCGTTCTTATTATCGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTCGATGTCGCTAACAACTTAACGCAGGGTCCTTGTAGAGCTTTGCTTGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCACTATTTATGGCGATTGGTAATATTTTTGGGTATGCCACTGGATCCTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCTTACCTCTGCATGCTCGGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATGTCGTGTTCATTGCAATTACAACATATTTGAGTGTTTCAGCAGCTCAAGAGATTTCTCTAGATTCAAGCGGCAGGTCGTCCCTGGTAGTGGAAGACGGTATGGGGCAATCAAGTCATGCTTCAGAAGCATTTCTCTGGGAGTTGTTTCATACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTTTAACTCTGTTGTCCTTGGAATAACTTCATTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTGTATGGGGAGTCTCTAATATTTTTATGGCTCTATGTTTCCTTTCTATACTGGTTGTCACCTATGTGGCAAACAATATGGGCTATATAGGCCATGAGCTTCCACCAAATAGTATCGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGTCCCTTTGGCAATTACTTACAGCATTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTGCAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTGGCAATAGTAATTCCTCAGGTTGTGGTATCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAATTCTCCAGCTTTTGCTGTGGCAGCATTTGCAGCCTTTGCAAGTGGACTCATTGCTATCTTGGCCCTTCCTCGGTCTAGTGCTCAGAATCCCAGATCCCTCACATGA 1512 46.49 MVMPESSERHRTASRRANQPQLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNLTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNIFGYATGSFSGWYKILPFTLTSACSVNCANLKSAFLIDVVFIAITTYLSVSAAQEISLDSSGRSSLVVEDGMGQSSHASEAFLWELFHTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGVSNIFMALCFLSILVVTYVANNMGYIGHELPPNSIVSAALIIFALLGVPLAITYSIPYAMISSRVESLQLGQGLSAGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAFAAFASGLIAILALPRSSAQNPRSLT 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1317264 1322342 - Carg22485-RA Car12g00209 157825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00209 503 Pfam MFS/sugar transport protein 44 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00209 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 914.064
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00514 Car12g00209 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00429 Car-Chr1:2464185 Car12g00209 Car-Chr12:1317264 1.87E-160 dispersed
Car05g00778 Car-Chr5:6094136 Car12g00209 Car-Chr12:1317264 8.18E-159 dispersed
Car05g00798 Car-Chr5:7151294 Car12g00209 Car-Chr12:1317264 7.10E-144 dispersed
Car12g00209 Car-Chr12:1317264 Car12g00703 Car-Chr12:5114889 1.09E-147 dispersed
Car05g00514 Car-Chr5:2996463 Car12g00209 Car-Chr12:1317264 2.14E-09 transposed
Car12g00209 Car-Chr12:1317264 Car05g00513 Car-Chr5:2994576 3.91E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g00429 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.7 8.9e-181 630.6
Car05g00778 . 26 501 Sucrose Transporter Gene Family AT1G22710 62.1 6.6e-176 614.4
Car12g00209 CCT 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 4.9e-139 491.9
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 1.0e-178 623.6
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT2G14670 62.4 3.6e-171 598.6
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 8.4e-136 481.1
Car01g00429 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.6e-149 526.6
Car05g00778 . 23 415 Sucrose Transporter Gene Family AT1G66570 60.3 1.1e-142 503.8
Car05g00798 . 152 604 Sucrose Transporter Gene Family AT2G02860 67.3 1.2e-179 626.7
Car12g00703 . 152 600 Sucrose Transporter Gene Family AT2G02860 69.4 1.5e-179 626.3
Car01g00429 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.3 2.1e-163 572.8
Car05g00778 . 17 485 Sucrose Transporter Gene Family AT5G06170 59.2 2.2e-160 562.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.8e-175 612.8
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT5G43610 62.2 5.8e-169 591.3
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Car12g00209 CCT 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 3.6e-206 714.9
Car05g00778 . 17 495 Sucrose Transporter Gene Family AT1G09960 50.7 9.0e-133 471.1
Car01g00429 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 2.1e-129 459.9
Car01g00429 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.9 8.1e-174 607.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-169 591.7
Car12g00209 CCT 27 503 Sucrose Transporter Gene Family AT1G71880 51.2 4.3e-135 478.8
Car01g00429 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 8.7e-168 587.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71890 58.7 6.9e-165 577.8
Car01g00429 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.9 8.1e-174 607.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-169 591.7
Car12g00209 CCT 27 503 Sucrose Transporter Gene Family AT1G71880 51.2 4.3e-135 478.8
Car01g00429 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.7 8.9e-181 630.6
Car05g00778 . 26 501 Sucrose Transporter Gene Family AT1G22710 62.1 6.6e-176 614.4
Car12g00209 CCT 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 4.9e-139 491.9
Car05g00798 . 152 604 Sucrose Transporter Gene Family AT2G02860 67.3 1.2e-179 626.7
Car12g00703 . 152 600 Sucrose Transporter Gene Family AT2G02860 69.4 1.5e-179 626.3
Car12g00209 CCT 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 3.6e-206 714.9
Car05g00778 . 17 495 Sucrose Transporter Gene Family AT1G09960 50.7 9.0e-133 471.1
Car01g00429 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 2.1e-129 459.9
Car01g00429 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 8.7e-168 587.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71890 58.7 6.9e-165 577.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.8e-175 612.8
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT5G43610 62.2 5.8e-169 591.3
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Car01g00429 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.6e-149 526.6
Car05g00778 . 23 415 Sucrose Transporter Gene Family AT1G66570 60.3 1.1e-142 503.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 1.0e-178 623.6
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT2G14670 62.4 3.6e-171 598.6
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 8.4e-136 481.1
Car01g00429 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.3 2.1e-163 572.8
Car05g00778 . 17 485 Sucrose Transporter Gene Family AT5G06170 59.2 2.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00209 Car_Chr12 FPKM 0.739021 1.21363 2.295481 2.216231 1.148576 0.890691 0.909933 2.950606 2.420422 2.486111