Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00210 ATGGCTTTTCACTCAGCTTTCTTCCTGCTTTTGTTCCTCACTTCCTCCATCTCTGCTTCTTCTCAAGCTTTTACTGCTACTTCTACTGCTCCCAATCAGTCCCAGTTCTTCCTTCTCATGCAAAACACTGCCTCGGGAAACCTCCTCACTGATTGGGATCTTTCCAAAGGTAAATCCTTCTGCAACTTCACCGGAATCGACTGCAATGACCGAGGTAGCGTCGTTCGGATCGATATCTCTGGCCAGCCTCTCTCTGGTGGCTTCCCCGAAGATCTATGCTCTTACCTCCCAGAGCTACGAGTTCTTCGTCTCGCCCATACTGGTTTCCAGGGACGTTTTCCTCCAGGAATCACTAATTGTTCTCTCCTTGAAGAGCTTGACATGAGCTCCATGAATCTCAATGGAACAATCCCGGATTTGTCGCAAATGAAACAACTACGTCTGCTCGACTTATCGTACAATTCCTTCACTGGCGACTTTCCCATGTCGGTTTTCGACCTTGTGAATCTTGAGGTGCTGAATTTCAATGAGAATTATAATCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGATTGAAGAAGCTGAAATCCATGGTGTTGACAACGTGTATGTTAGACGGGGAAATCCCGAGATCGATTGGGAACATGACGTCTCTTGTCGATCTCGAACTCAGTGGGAACTTTCTCAAGGGAGAGATCCCAAAAGAAATTTCCTTACTGAAGAACTTGCAACAGCTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAATTCGGAAATCTAACGGAGCTCGTCGACGTCGACATGTCGGTGAACCTTTTAACAGGAGAGCTACCAGAATCCATTTGCAAACTCCCAAAGCTTAAAGTTCTACAGATTTACAACAATAGTCTAACAGGAGAGATCCCAAGTGTACTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAACTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTACTCACCAATGGTCGTCGTCGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGATATATGCAGAGGGGGGGAATTGCTATACTTTCTTGTCCTGCAAAACAGCCTTTCTGGAGAAATCCCAGCAAGTTTCGCCGAATGCGAGTCGATTTTGAGGTTTCGGGTTAGTTTCAATCAGTTGGTAGGAGAAATTCCTCAAGAACTTTTGGCTCTCCCCCATGTTTCAATCATTGATGTTGCTCATAATCATCTCACTGGTTCCATTTCAAGTTCTATCTCACAGGCAAGAAACTTATCAGAGTTGTTCTTGCAAAGAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGGAGCAACCAATCTGGTGAAGCTTGATCTCAGCAATAATCTTCTCTCCGGTCCGGTGCCGTTCGAGATCGGCAATCTGAAGAAGCTTAATCTGGTGATGTTACAAGGAAATCAGCTGGATTCATCGATCCCTAGTTCATTCACTTCGTTGAAATCCCTCAGTGTTCTTGATCTCTCAAACAATCGTTTTTCCGGCGAAATCCCAGAAAGTTTGAGTAAATTGTCCCCAAATTCTTTGAATCTTTCGAACAATCAACTTTCCGGTCAAATTCCTCTGCCTTTCATCAAACAAGGATTGGCGGATAGATTTTCCGGCAATCCAAATCTATGCATTCCACCGGCGTATTTCATTTCAACGGAACAGAAATTCCGAATTTGCTCGCGTTTTCCCTTCGCAAAACGTCTGAATTTCATCTGGACAATCGGAATTCCATTGCTCATCTTCATCACCGCCGCCGTCATGTTCATAAAACGCCGAATCACAACCAGAAAGACCTCAGACATCGAGAACAAAGAAACCCTAACTTCGCGATTCTTCGACCAAAACTCGATTCTAGAAGCCATGGCGGAAAAGAACATCGTCGGTCACGGTGGATCCGGAACCGTCTACAAAATCGAGATCGGAAAAGGAGAAATCGTCGCCGTAAAGAGGCTATGGAATCGGAGAGCGAAACATCTCGTCGACAAGGAATTGAAAACAGAAATCGAAACCCTAAAAACCGTACGGCACAAGAACATCGCCAAACTCTACAACTACTTTGCGGCTCTAAATTGCAGCCTTATGGTTTACGAATATATACCCAACGGAAACCTCTGGGACGCGCTTCATAAAGGGTGGATTCATCTCGATTGGCCCACGCGCCACCGCATCGCGATTCATCAACAGCAACAACCAAATGCGACGTGTACAGTTTTGGGGTGGTTTTAA 2292 45.03 MAFHSAFFLLLFLTSSISASSQAFTATSTAPNQSQFFLLMQNTASGNLLTDWDLSKGKSFCNFTGIDCNDRGSVVRIDISGQPLSGGFPEDLCSYLPELRVLRLAHTGFQGRFPPGITNCSLLEELDMSSMNLNGTIPDLSQMKQLRLLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISRLKKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEEFGNLTELVDVDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKYSPMVVVDLSENRLSGPLPLDICRGGELLYFLVLQNSLSGEIPASFAECESILRFRVSFNQLVGEIPQELLALPHVSIIDVAHNHLTGSISSSISQARNLSELFLQRNRISGVIPPEISGATNLVKLDLSNNLLSGPVPFEIGNLKKLNLVMLQGNQLDSSIPSSFTSLKSLSVLDLSNNRFSGEIPESLSKLSPNSLNLSNNQLSGQIPLPFIKQGLADRFSGNPNLCIPPAYFISTEQKFRICSRFPFAKRLNFIWTIGIPLLIFITAAVMFIKRRITTRKTSDIENKETLTSRFFDQNSILEAMAEKNIVGHGGSGTVYKIEIGKGEIVAVKRLWNRRAKHLVDKELKTEIETLKTVRHKNIAKLYNYFAALNCSLMVYEYIPNGNLWDALHKGWIHLDWPTRHRIAIHQQQQPNATCTVLGWF 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1325059 1328025 + Carg22484-RA Car12g00210 157826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00210 763 Pfam Leucine Rich Repeat 508 529 IPR001611 GO:0005515
Car12g00210 763 ProSiteProfiles Protein kinase domain profile. 643 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00210 763 Pfam Leucine rich repeat 410 470 IPR001611 GO:0005515
Car12g00210 763 Pfam Protein kinase domain 645 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car12g00210 763 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00517 Car12g00210 CCT
Car09g00542 Car12g00210 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00543 Car-Chr9:3084391 Car12g00210 Car-Chr12:1325059 0 dispersed
Car12g00210 Car-Chr12:1325059 Car19g00389 Car-Chr19:5706454 6.77E-136 dispersed
Car12g00210 Car-Chr12:1325059 Car05g00517 Car-Chr5:3004746 0 wgd
Car12g00210 Car-Chr12:1325059 Car09g00542 Car-Chr9:3080351 3.33E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89216 PF00069 Pkinase 2.60E-14 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00210 - - csv:101220145 1176.77