Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00215 ATGGATAAGAATCCAGCTAAAGATATAGTTTCAGGAGTATATTTGCATCATGTCAGATGGATCTTATATGTTATTACCATTCTCATCACTCTTATATCTCAGATAAACAATAAGGCAAGGCCACAAGGTCATTTGCATTATGGGTTAAAATGCACCAGGCCGTCCAGAGTAGACGACAATTTTTCTGCTGGTACGAGCTTGCCTACTGGCAAAGTGTCGTCTTTTGGCATGTTGATGAAAAACATTGATGTTTTGGAGGAAACTTTTGCTGAATCAGGCATGCTAAGCTTGGGAAGAGATGGCCAAAATGACTTAGCCATTGAGGACGGTGGATATCATAACGTAAACCCAAAAACAGATGGCCAAAATGATGACGTCGTAGTTTACTCTGGTAAAAGAGCAGGAAGAAGATCAGTAAAAGAGAGAGCAGTGGATAATGCTGATAAAGTAGCTTCCCAGCTGCTAACTACACGAGCGGGTAAAGAAAAATTTCGTAATTCCTCGATATTTTCAAGAAAAAGAGCGTTTAAAAGACCAAACGTTGCACGAAATGAAGTTGAAATATCCACAGGGGTTAAGGTAGTTGCAAATTTAGAAAGAATTAGAGAAACTTTAGAGAAGGAAACTGGAAAAATATCAAGCATGAGTTGCTGGGCCAATGCTGCTGGTGTTGATAAAAAGGACCTCCAAAAACAGCTGCAATTTGGTTGGTTCTGTCAAGATGAACTCTTAAGGACTACTAATTCATTAGTTCGGTTCCTTTCGAAGAAGTATCAATGCTCTGGACTACCAATGGAGGACTTAGTTCAGGCAGGAGCTGTTGGTGTTCTGCAAGGTGTGGAAAGGTTTGACCCGAAAAGGGGTTTTACATTGTCAACCTATATCCATTACTGGATAAGGAAATTGATGTCGAGCGTTGTTGCACGAAATTCAAGGGGAATTCAAATTCCATGGTCATTGACCAAGGCAATGAATCAGATTCAGAAAGCTCGAAAGGTCTTGAACAACGGTAGTAGTCGATATTCTGATGACGATATAGCGAAGGCCACTGGTCTTCCTTTGGCTAAGGTCCTGGCTATGCGATACGGACTTGTCGATTTCCGACCCAAGTCACTTGAGGAAACTGGGAAACTTCTGCAGATAAGCAAGGAGTGGGTTCGAAAAATAGAAAAGAAAGCCATTACAAAGCTGAAAAATGAAGAGACTAACTTGCAGCAGGCCAAGGAAGCCAAGGTTCATACTAAGAAAGCTACTGTCACAAGAAATCACGACGAATTGTTCATATCTCAATCATCGACGTTTCGAGCAAAGAATTCTGTACAGTTCCATACGCAGACACACCAACCCACTGCTTCCAGTTTGGATCTAATGAATTATCCAGGTTGA 1386 41.13 MDKNPAKDIVSGVYLHHVRWILYVITILITLISQINNKARPQGHLHYGLKCTRPSRVDDNFSAGTSLPTGKVSSFGMLMKNIDVLEETFAESGMLSLGRDGQNDLAIEDGGYHNVNPKTDGQNDDVVVYSGKRAGRRSVKERAVDNADKVASQLLTTRAGKEKFRNSSIFSRKRAFKRPNVARNEVEISTGVKVVANLERIRETLEKETGKISSMSCWANAAGVDKKDLQKQLQFGWFCQDELLRTTNSLVRFLSKKYQCSGLPMEDLVQAGAVGVLQGVERFDPKRGFTLSTYIHYWIRKLMSSVVARNSRGIQIPWSLTKAMNQIQKARKVLNNGSSRYSDDDIAKATGLPLAKVLAMRYGLVDFRPKSLEETGKLLQISKEWVRKIEKKAITKLKNEETNLQQAKEAKVHTKKATVTRNHDELFISQSSTFRAKNSVQFHTQTHQPTASSLDLMNYPG 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1364637 1368159 + Carg22479-RA Car12g00215 157831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00215 461 Pfam Sigma-70 region 2 249 312 IPR007627 GO:0003700|GO:0006352|GO:0006355
Car12g00215 461 Coils Coil 390 417 - -
Car12g00215 461 Pfam Sigma-70, region 4 356 398 IPR007630 GO:0003700|GO:0006352|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00215 K03093 sigI; RNA polymerase sigma factor - csv:101206167 451.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00215 Car-Chr12:1364637 Car20g00821 Car-Chr20:5295827 1.16E-17 dispersed
Car12g00215 Car-Chr12:1364637 Car05g00521 Car-Chr5:3024458 3.53E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g42 . . . . . . . . . . . . . Car12g00215 Sed01g1245 Cpe07g00198 . Bhi04g00884 Tan02g2529 . . Hepe10g0389 . Lcy13g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01198 Cam08g1660 Cec08g1237 Cco08g1356 Clacu08g1357 . Cre08g1144 . Csa02g02242 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007971 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 3 5 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00215 Car_Chr12 FPKM 24.536585 26.373892 7.86178 5.418495 3.148166 2.716414 4.842157 4.10101 3.658563 4.523643