Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00224 ATGCTCTCCTTCCTCCGACATCGCCACTATTTGAGACCAGTTGAGAGATTAATGGAGGGTGCAATGAAGAAGACGATGAGTAATGGTAGTGTTCATATGGAGATTGAAGAAATTGACAATAAGTACGAGGAAGCTTATGGGGAACATAATGCCACTGAAGATCAGCTCATTACTCCTTGGACTGTCTCTGTTGCTAGTGGCTATTCGTTGTTGCGTGATCCAATCTATAACAAAGGGCTTGCTTTTACTGAGAAAGAGAGGGATGCTCATTACTTGCGTGGTTTGTTGCCACCAGCACTTCTTAATCAGGAGCTTCAGGAAAGGAGGATGATGCACAATCTACGCAACTATGAAGTTCCATTACACAGATATATTGCCATGATGGATCTTCAGGAGAGAAACGAAAGGCTGTTCTACAAGCTTCTGATCGATAACGTCGAAGAACTGCTTCCCGTCGTCTACACTCCGACCGTCGGCGAAGCTTGCCAGAAGTACGGAAGCATTTACAGGCGACCTCAGGGCCTTTTCATCAGTTTAAAAGAGAAGGGAAAGATTCTTGAAGTGTTGAAGAACTGGCCCGAAAGGAACATTCAAGTTATTGTTGTGACCGACGGTGAGCGGATTCTCGGCCTCGGGGATCTCGGATGCCAGGGCATGGGGATTCCTGTGGGGAAGCTCTCGTTGTATACAGCGCTCGGAGGAATCCGACCCTCGGCTTGCTTGCCCATCACCATCGACGTCGGCACGAACAATGAGCAGCTTTTGAACGATGAGTTTTACATCGGCCTTCGACATAAACGTGCTAGAGGACAGGAGTACATGGAGCTTTTGGATGAGTTCATGTATGCAGTAAAGAAGAACTATGGAGAGAAAGTGTTGATTCAGTTTGAGGATTTTGCAAACCACAATGCGTTCGAGTTGCTTTCGAGATATAGCTCGTCACACCTCGTGTTTAACGATGACATTCAGGGTACGGCATCTGTCGTCGTCGCGGGACTTCTTTCAGCTCTTAAACTTGTTGGAGGGACATTAGCTGACCATACTTTCCTGTTCCTTGGAGCTGGAGAGGCTGGAACTGGTATAGCTGAGCTTATTGCTTTGGAGGTTTCAAAACAAACCCAAGCTCCAGTTGAAGAGACTCGCAAGAAGATTTGGCTTGTGGACTCAAAGGGGCTGATCGTTCGATCCCGCTTCGAATCCCTTCAACACTTCAAGAAGCCTTGGGCTCACGACCATGAATCTATCAAGGATCTTTTGGGCGCCGTCCAGGCAATCAAGCCAACAGTGTTGATAGGAACATCTGGTGTTGGAAAGACATTTACAAAGGAAGTTGTGGAGGCCATGGCATCCTTCAATGAGAAACCACTCATCCTTGCTCTCTCGAACCCGACGTCACAATCGGAGTGTACCGCCGAAGAAGCTTATACATGGAGCCAGGGTCGGGCGATCTTCGCCAGTGGAAGTCCATTTGACCCTGTTGAATATGATGGGAAAGTTTATGTGCCTGGCCAGGCCAACAATGCTTACATATTCCCTGGATTTGGCTTGGGACTGATCATGTCGGGTACTATTCGCGTGCACGACGACATGCTCTTGGCAGCCTCGGAGGCGCTGGCTGCCCAAGTGAGTGAAGAAAACTATGAGAAGGGATTGATTTACCCTCCTTTTACCAATATCAGAAAGATATCAGCTAACATTGCAGCTAAAGTTGCTGCTAAAGCCTATGAACTTGGTCTGGCTTCTCGTCTTCCTCGACCGAAGGATCTCGTAAAGTTCGCCGAGAGCTGCATGTACAGCCCTGGCTACCGTAGCTACCTTTAA 1821 47.89 MLSFLRHRHYLRPVERLMEGAMKKTMSNGSVHMEIEEIDNKYEEAYGEHNATEDQLITPWTVSVASGYSLLRDPIYNKGLAFTEKERDAHYLRGLLPPALLNQELQERRMMHNLRNYEVPLHRYIAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLFISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEQLLNDEFYIGLRHKRARGQEYMELLDEFMYAVKKNYGEKVLIQFEDFANHNAFELLSRYSSSHLVFNDDIQGTASVVVAGLLSALKLVGGTLADHTFLFLGAGEAGTGIAELIALEVSKQTQAPVEETRKKIWLVDSKGLIVRSRFESLQHFKKPWAHDHESIKDLLGAVQAIKPTVLIGTSGVGKTFTKEVVEAMASFNEKPLILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYDGKVYVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAAQVSEENYEKGLIYPPFTNIRKISANIAAKVAAKAYELGLASRLPRPKDLVKFAESCMYSPGYRSYL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1508283 1514908 - Carg03831-RA Car12g00224 157840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00224 606 Pfam Malic enzyme, NAD binding domain 322 574 IPR012302 GO:0051287
Car12g00224 606 Coils Coil 35 55 - -
Car12g00224 606 Pfam Malic enzyme, N-terminal domain 131 311 IPR012301 GO:0004471
Car12g00224 606 ProSitePatterns Malic enzymes signature. 318 334 IPR015884 GO:0004471
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00224 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - csv:101218724 1132.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00600 Car-Chr10:3055305 Car12g00224 Car-Chr12:1508283 0 dispersed
Car11g00527 Car-Chr11:2848991 Car12g00224 Car-Chr12:1508283 0 dispersed
Car12g00224 Car-Chr12:1508283 Car17g00713 Car-Chr17:6519722 0 dispersed
Car12g00224 Car-Chr12:1508283 Car05g00528 Car-Chr5:3066979 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00224 Car_Chr12 FPKM 4.172353 4.925134 0.241988 0.757932 4.801061 2.99798 4.223613 0.874641 0.594711 1.279745