Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00233 ATGATGGTTCAGTTTGGAGCTGGGGTTACAACATCTTTTTATCCTCTCTACATCCTTGACTATCACAAAGATGGCCAACTTGGATTTGATGGAGGAAATTCCGCTACCCCGTGCTTGCTGAAGCAGTTTCTTGAGTTGGAATCTCCAGATTCTTCGACAGACGAGTCAGGCTCGAAGAATAAGAGGTCAAAAACGATTTGTGACGTCAAAGCCGGGGGGTTGGTCTCTCTTGCAATCGACGATCTCGGAGCCCTATGGATGTGGGGTAATTGTCCAAAGCCAAACGGTGAGGACGAAGTTGGCTTATCTTATGTTAGCAGCTTCACTCCCTCTCCAGTGTCGGAGCTCCATGGCCATACTGTTGTTAAGGTTGCTTGTGGTAATGAGCATGTGGTGGCCCTGGTTAGTGTTGGGGCAACCTACAATAAAGATGAAGATTTAGTTTGCTACTCATGGGGAAATAATTCTCATGGCCAATTAGGCCTGGGAGATAGAGATGGCAGGGCACGTCCCCAACTTATCGAGACATTTAACGAGGCATCCCCTTGGGCAGTGTATGAGGTAGCGTGCGGGGCATTCCATACTGCTTTACTTAGCCGCAGAAAGGGACCAAGTGACACTTTAGAAAGTGTATGTTGGACATTTGGTATAGGGGAAAATGGGCAGCTTGGACATGGAACTACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAATTGCCGCAATCTGTATCTCTGATCTCAGTTGCTTGTGGCCTTTTTCACACGAGCGTTGTTTCATCAGCTGGAGATGTATGGTCCTGGGGAATGGAAAGGGGACTTGGACTTTGCCCTGATGCTAGTTTCACTGGGACCGACACAGGCGATGCGATTTCTCCCCTATCCATCTTTTGTAATGGGTCTCAATCTCCAAAATTCTTGGATCCTGTTCAGGTTGCTTGTGGGGCTGCTCATACTATCATTGTTGCACATAATGGATATAAGTTATGGTCATGGGGACGAGGAAGAAGCGGGGTTCTTGGAAATGGTAAGACAGTCGATTGTTATACTCCCACCGTCGTGTCGTGGCCTCCACCCGGCGAGGATTTCATTCAAGAGGAAATAGAAACCAAAAGCACGGAGGATAAAGTCGGAGAAGATAGTACCGAGGAAGTAACTGAAGAAAACAAAAAATTGCTTATGGCTATGGAGGAAATCAAAGTTCTGCTAGAGAAACTGTCTGTTATGGAACGGTATGCAAGCTTTCTTCATGGCTCCATATTTGGAAAACCTTTCCAAGAAGGAGATATCCCACTCTCATTGCGAAATTCTGGTACGTTCGACATTGCCAAGGAATGGGAAAGCCTTTTCGAGTCGATAGATCGCAAAGATCTACTAAGGATGGAGGCAGTCTACCAACACATGCTGGCAACTATCAAAGACAAGATCATGAAGAAAAGGGTCCAGGAGCTTGTGAACGAGTTTCTCCAATCTTCAACGTCTAAAAATTAG 1491 46.01 MMVQFGAGVTTSFYPLYILDYHKDGQLGFDGGNSATPCLLKQFLELESPDSSTDESGSKNKRSKTICDVKAGGLVSLAIDDLGALWMWGNCPKPNGEDEVGLSYVSSFTPSPVSELHGHTVVKVACGNEHVVALVSVGATYNKDEDLVCYSWGNNSHGQLGLGDRDGRARPQLIETFNEASPWAVYEVACGAFHTALLSRRKGPSDTLESVCWTFGIGENGQLGHGTTQNELLPKPVKELPQSVSLISVACGLFHTSVVSSAGDVWSWGMERGLGLCPDASFTGTDTGDAISPLSIFCNGSQSPKFLDPVQVACGAAHTIIVAHNGYKLWSWGRGRSGVLGNGKTVDCYTPTVVSWPPPGEDFIQEEIETKSTEDKVGEDSTEEVTEENKKLLMAMEEIKVLLEKLSVMERYASFLHGSIFGKPFQEGDIPLSLRNSGTFDIAKEWESLFESIDRKDLLRMEAVYQHMLATIKDKIMKKRVQELVNEFLQSSTSKN 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1551988 1553989 + Carg03840-RA Car12g00233 157849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00233 496 Pfam Regulator of chromosome condensation (RCC1) repeat 150 198 IPR000408 -
Car12g00233 496 Pfam Regulator of chromosome condensation (RCC1) repeat 213 258 IPR000408 -
Car12g00233 496 Pfam Regulator of chromosome condensation (RCC1) repeat 329 358 IPR000408 -
Car12g00233 496 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 188 198 IPR000408 -
Car12g00233 496 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 83 137 IPR000408 -
Car12g00233 496 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 210 262 IPR000408 -
Car12g00233 496 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 325 IPR000408 -
Car12g00233 496 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 147 201 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00233 - - - csv:101217770 836.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00533 Car-Chr5:3102153 Car12g00233 Car-Chr12:1551988 4.67E-07 dispersed
Car12g00233 Car-Chr12:1551988 Car07g01222 Car-Chr7:7488283 3.55E-20 dispersed
Car12g00225 Car-Chr12:1515343 Car12g00233 Car-Chr12:1551988 6.44E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00233 Car_Chr12 FPKM 0.0 0.0 0.153923 0.0 4.26561 4.7647 4.23357 0.0 0.0 0.0