Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00237 | ATGAGCTCTGACTCGAACGCTGTTCCAAAGAAAATCAAGCGCATCAGAAACCCAGAATCCAATTCCGATTCGAATTCCAGCAAGCACCCAGTTTACAGAGGCGTCCGGATGCGAAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGAAAGAAATCCCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCAGCTCGAGCCCACGACGTCGCCGCCTTAAGCATCAAAGGCAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCTGTCTCTCTCGCCCCTCGCGACATCCAAGCCGCCGCCACCCAAGCCGCCCACATGCACAATCTATCTCCTAACAACATTCCCACCACCACCACCACCACCGACGACGCTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCACCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTTGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGATGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTATTGTGGGATTATTAA | 645 | 54.42 | MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPNNIPTTTTTTDDASDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1595860 | 1596504 | - | Carg03844-RA | Car12g00237 | 157853 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00237 | 214 | ProSiteProfiles | AP2/ERF domain profile. | 31 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
| Car12g00237 | 214 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Car12g00237 | 214 | MobiDBLite | consensus disorder prediction | 117 | 137 | - | - | |
| Car12g00237 | 214 | MobiDBLite | consensus disorder prediction | 117 | 134 | - | - | |
| Car12g00237 | 214 | Pfam | AP2 domain | 30 | 80 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01205 | Car-Chr4:6934587 | Car12g00237 | Car-Chr12:1595860 | 1.63E-68 | dispersed | |
| Car06g00820 | Car-Chr6:6333845 | Car12g00237 | Car-Chr12:1595860 | 7.43E-43 | dispersed | |
| Car08g00135 | Car-Chr8:826946 | Car12g00237 | Car-Chr12:1595860 | 2.14E-41 | dispersed | |
| Car09g01074 | Car-Chr9:9902694 | Car12g00237 | Car-Chr12:1595860 | 4.00E-30 | dispersed | |
| Car10g00596 | Car-Chr10:3011050 | Car12g00237 | Car-Chr12:1595860 | 2.38E-65 | dispersed | |
| Car11g00522 | Car-Chr11:2808630 | Car12g00237 | Car-Chr12:1595860 | 6.96E-50 | dispersed | |
| Car12g00237 | Car-Chr12:1595860 | Car12g01235 | Car-Chr12:11712853 | 5.96E-49 | dispersed | |
| Car12g00631 | Car-Chr12:4272555 | Car12g00237 | Car-Chr12:1595860 | 1.68E-45 | dispersed | |
| Car16g00132 | Car-Chr16:761641 | Car12g00237 | Car-Chr12:1595860 | 9.13E-37 | dispersed | |
| Car12g00237 | Car-Chr12:1595860 | Car05g00538 | Car-Chr5:3137565 | 1.08E-72 | wgd | |
| Car12g00237 | Car-Chr12:1595860 | Car09g00561 | Car-Chr9:3186595 | 3.95E-68 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4387 | PF00847 | AP2 | 5.00E-14 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00237 | K09286 | - | csv:101206242 | 283.878 |