Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car12g00240 | ATGGCCAAAATTGCATTGGGATGCGTTGGCGAGGCGACTCAGCCCGACTGCATCCGAGCCCTCGTCGTCGAGTTCATCACCACCTTCCTCTTCGTCTTTGTTGGTGTCGGATCAGCCATAACTGCTAATACACTACTAGGAAATGCACTCGTGGGATTGTTCTCTGTCGCTGTCGCACATGCGCTGGTCGTGGCTGTGATGATCTCCGCCGGACACATTTCCGGTGGTCACCTAAACCCCGCCGTCACACTCGGTCTCCTTTTTGGTGGTCATATCACAGTTGTCCGATCCGCTTTATATTGGATCATTCAGTTGCTAGCAGCGTCTGCAGCTAGTTTTCTGTTATCGTACCTCACCGGAGGCTCCGCTATTCCAGTTCACACATTAGCAAGTGGAGTTGGCTATCTTCAGGGAGTGATATGGGAGATTATTCTCACCTTCTCCTTGCTGTTCACTGTGTACGCAACAATGGTTGATCCAAAGAAGGGAGCTCTTGATGGGTTGGGTCCAACGTTGACTGGGTTTGTGGTGGGGGCTAACATCTTGGCTGGTGGGGCCTTTTCTGGAGCTTCAATGAACCCAGCAAGATCATTTGGCCCAGCTTTGGTGGCTGGAGACTGGACTGACCACTGGGTTTACTGGGTTGGACCTCTTATTGGTGGAGGACTTGCTGGGTTCATCTATGAAAATTTCTTCATTGATAGATCTCATGTGGCTCTGCCTAGGGCAGAGGCTGAGTATTAA | 744 | 50.94 | MAKIALGCVGEATQPDCIRALVVEFITTFLFVFVGVGSAITANTLLGNALVGLFSVAVAHALVVAVMISAGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLSYLTGGSAIPVHTLASGVGYLQGVIWEIILTFSLLFTVYATMVDPKKGALDGLGPTLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFFIDRSHVALPRAEAEY | 247 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1610548 | 1612181 | - | Carg03847-RA | Car12g00240 | 157856 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car12g00240 | 247 | Pfam | Major intrinsic protein | 12 | 228 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Car12g00240 | 247 | ProSitePatterns | MIP family signature. | 77 | 85 | IPR022357 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car12g00240 | Car-Chr12:1610548 | Car14g00213 | Car-Chr14:1009026 | 4.22E-78 | dispersed | |
| Car12g00240 | Car-Chr12:1610548 | Car03g01082 | Car-Chr3:8799843 | 1.01E-80 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car12g00240 | K09873 | - | csv:101205380 | 424.476 |