Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00241 ATGGATGCAACTGCTTGCAATCTACCGTTGTGTGGAATTCATCACTTCTATTCCAATTCAATGGAAGTTCAAGCTGGAAAGTCCATGTTCGCGGTGAAGGTTCCTCAATCTTTGAAGTCCAGCTCATTTCGTCGTCGGTGGGGCGGTTCTTCGAAGCTAAAGTTGAAATCAAGATCGAGAATTCGAGTATTGGCTTCCAGTTCGAACTCTGTGTATGAATCTTCTGCGTCGGCGAAAATTGAGAACGATGATGACGGAGGTCTTGTTTGCCCTCCTGGCTATCAGCCCACGCCTGCTAATCGCGAGCTGCGGACTCCTCACAGCGGGTATCACTTTGATGGGAGTACTCGGAAATTCTTTGAAGGTTGGTACTTCAAGGTATCGATTCCACAGAAGAGGCAGAGTTTCTGTTTCATGTACTCTGTGGAGAACCCTGCATTTCCTAAGAAATTAACGACACCCGAAATCGTACAACATGGACCCAGGTTTACAGGAGTTGGAGCACAGATTCTTGGTGCTTATGACAAATACATATGCCAATACTCTGAAGAGTCTCAAAACTTTTGGGGAAGTAGGCATGAACTGAGTCTGGGCAACTGTTTTGCATCTAAAGGAGGGTTTAAGCCTCCAAACAAGGAAGTTCATCCAGAGGAGTTCAATAAAAAGGTCGTGGAAGGTTTTCAAGTCACTCCACTTTGGCATCAAGGATTTATTCGTGATGATGGCAGGACAAACTATTTGGAAACTGTAAAAACTGCTCGTTGGGAATACAGTACCCGCCCAGTTTATGGCTGGGGAAATGTTGGATCTAAGCAGAAGTCAACAGCTGGCTGGCTTGCAGCATTTCCAGTATTTGAACCTCATTGGCAAATATGCATGGCAGGAGGGTTATCCACAGGTTGGATTGAGTGGGAGGACGAAAGGTTTGAGTTTGTAAATGCCCCTTCATACTCCGAAAAGAATTGGGGTGGAGGATTTCCCAGAAAATGGTTTTGGGCTCAGTGTAATGTTTTTGAAGGTGCTCGTGGAGAAGTTTCTCTTACGGCTGGTGGAGGTTTGAGACAACTTCCTGGATTGACGGAAACCTTTGAAAATGCTGCATTGGTTGGAGTCCACTATGATGGAATTTTTTATGAATTCGTGCCATGGAATGGAACTGTTAACTGGGAAATAAGTTCTTGGGGCTATTGGTATATTGCTGCCGAAAATGCAACGCACAAGATTGAATTAGAAGCCAAAACAGACGAGCCTGGTTCACCGTTACGTGCTCCTACAACGGAACGTGGGCTTGACACTGCTTGCAAAGATACTTGTTTTGGTATATTGAAATTGCAAATGTGGGAACGAAGATTTGATGGTAGCAAGGGCAAGATTGTATTGGATGTCACAAGTAACATGGCGGCATTGGAAGTTGGAGGAGGGCCTTGGTTCAACACCTGGAAGGGAGAAACTACCACCCCAGAGATCCTCAAGCGTGCTCTTACAACACCTATTGATGTGGAACAAGCTTTTAACTTGCTTCCACTCTTCAAACCTCCTGGCTTGTAG 1548 45.22 MDATACNLPLCGIHHFYSNSMEVQAGKSMFAVKVPQSLKSSSFRRRWGGSSKLKLKSRSRIRVLASSSNSVYESSASAKIENDDDGGLVCPPGYQPTPANRELRTPHSGYHFDGSTRKFFEGWYFKVSIPQKRQSFCFMYSVENPAFPKKLTTPEIVQHGPRFTGVGAQILGAYDKYICQYSEESQNFWGSRHELSLGNCFASKGGFKPPNKEVHPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVKTARWEYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWEDERFEFVNAPSYSEKNWGGGFPRKWFWAQCNVFEGARGEVSLTAGGGLRQLPGLTETFENAALVGVHYDGIFYEFVPWNGTVNWEISSWGYWYIAAENATHKIELEAKTDEPGSPLRAPTTERGLDTACKDTCFGILKLQMWERRFDGSKGKIVLDVTSNMAALEVGGGPWFNTWKGETTTPEILKRALTTPIDVEQAFNLLPLFKPPGL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1613900 1623078 - Carg03848-RA Car12g00241 157857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00241 515 Pfam Tocopherol cyclase 117 473 IPR025893 GO:0009976
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00241 K09834 VTE1, SXD1; tocopherol cyclase [EC:5.5.1.24] - csv:101206720 982.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g308 . . . . . . . . . Cmo12g00211 . . . Car12g00241 Sed03g1488 Cpe07g00220 . Bhi04g00836 Tan02g2569 Cmetu03g1888 . Hepe10g0352 . Lcy13g1401 . . . . . . . . . Cone17ag1118 Cone20ag0603 . . . Cme03g01735 Blo17g00073 . . Bda13g01335 Bpe14g00513 . . . . . . . Cma12g00257 . . . . . . . . . . . Cla08g01228 Cam08g1687 Cec08g1266 Cco08g1387 Clacu08g1385 . Cre08g1170 Lsi08g01091 . Chy03g01241 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008542 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00241 Car_Chr12 FPKM 11.291113 14.240284 0.705401 0.922369 14.50882 14.14423 13.426929 0.880422 0.820825 0.847127