Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car12g00258 ATGGTTCTTTGGGTTTTTGGCTATGGATCTCTTGTGTGGAATCCAGGATTTGACTTCGACGAGAGAGTGATAGGTTTTATTAGAGATTATAGGCGTGTATTCGACCTCGCTTGTTTTGATCATAGAGGTACACCACAAAACCCTGCTAGAACTCTCACGCTTGAACCCAAAGAAGGATCCATTTGCCAAATTTTTGTAACCTTGCCTGATTATAGCACTCTTTCTCTATACCAGTGGGGTGTTGCATATTGCATCCATGGAGGATCTGAACGAGAGAGAGCGGTTGTGGAGTCCCTGGAGAGAAGAGAGTGCGAGTATGATGGAAAGACCATTGTAGACTTTTACAAGGATAAAGACTCCATAGAACCAACATTGACAGGAGTTTTAGTTTTTACATCGACACTTGATAAATTGCTAAACAAATACTATCTAGGACCTGCTCCCTTGGAGGAAATGGCTAGTCTTGAGGCGAAGCCTGAAATGGAAAGCACAAAGAGAACAATATCTGCTAGCGGTGGATCTGGGCTGTTACAAATGGTATCAGAGCCAGACACCGGACGATGTGCTAGCTTTTTCGCTGTTCCTCGAAGGGGGGTAGACACGAGACGGTGTGCTAGTAAGGATGCTGGGCCTCGAAGGGGAGTGGATTTGATGGTGGTCCCACATCGATTGAAGGAAGGAAAGAGTGCCAGCGAGGACGCTGGGCCCCGAAGAGGCCAAATTGCAACTGCATCTGGTCCATGTGGGAACAACAGAGACTATCTATTCCGATTGGAGAACGCCTTGTTCGAAATTGGTCACGGAGACGATATGGTGATCGAGCTAGCGAACGAGGTGAGGAATATCCTTGGGAAGAAGGTTAGAAAGGGGAAGAAGAAGCAGGCGGTCAGACCGACGACTCACCTGCCTTTTTTGTCCTTCATCTCCGGTGTTCAGGTGCATCCGCTCGCCGACGCTGCGGTGGGAACGGATTCCTACGAAGAAAATGTAAAGATTGGTATGGTGAAAGGTGAAAGCCATGGTAACTCAAGAGCTAAGAAAACAAGCAATCTGGTGGATTGA 1062 47.27 MVLWVFGYGSLVWNPGFDFDERVIGFIRDYRRVFDLACFDHRGTPQNPARTLTLEPKEGSICQIFVTLPDYSTLSLYQWGVAYCIHGGSERERAVVESLERRECEYDGKTIVDFYKDKDSIEPTLTGVLVFTSTLDKLLNKYYLGPAPLEEMASLEAKPEMESTKRTISASGGSGLLQMVSEPDTGRCASFFAVPRRGVDTRRCASKDAGPRRGVDLMVVPHRLKEGKSASEDAGPRRGQIATASGPCGNNRDYLFRLENALFEIGHGDDMVIELANEVRNILGKKVRKGKKKQAVRPTTHLPFLSFISGVQVHPLADAAVGTDSYEENVKIGMVKGESHGNSRAKKTSNLVD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1735695 1738586 - Carg03865-RA Car12g00258 157874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car12g00258 353 Pfam ChaC-like protein 3 155 IPR006840 GO:0003839|GO:0006751
Car12g00258 353 Pfam ChaC-like protein 239 281 IPR006840 GO:0003839|GO:0006751
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car12g00258 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101208455 251.906
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00088 Car-Chr12:385560 Car12g00258 Car-Chr12:1735695 4.89E-06 dispersed
Car12g00258 Car-Chr12:1735695 Car19g00246 Car-Chr19:2560354 7.11E-34 dispersed
Car05g00694 Car-Chr5:4698528 Car12g00258 Car-Chr12:1735695 1.80E-21 transposed
Car10g01014 Car-Chr10:10073486 Car12g00258 Car-Chr12:1735695 2.71E-09 transposed
Car17g00379 Car-Chr17:2458860 Car12g00258 Car-Chr12:1735695 4.84E-11 transposed
Car18g00093 Car-Chr18:502367 Car12g00258 Car-Chr12:1735695 1.37E-12 transposed
Car01g01205 Car-Chr1:11116118 Car12g00258 Car-Chr12:1735695 2.07E-17 wgd
Car12g00258 Car-Chr12:1735695 Car05g00557 Car-Chr5:3275111 2.12E-37 wgd
Car12g00258 Car-Chr12:1735695 Car09g00468 Car-Chr9:2613750 8.52E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g241 . . . . . . . . . . Cma01g01587 . . Car12g00258 Sed03g1518 Cpe07g00236 . Bhi04g01114 Tan02g2598 . . . . Lcy13g1366 . . . . . . . . . . Cone20ag0622 . . . Cme03g01710 . . . . . . . . . Cmo01g01635 . Cma09g00541 . . . . Cpe02g00391 . . . . . . . Cla08g01252 . . . . . Cre08g1191 Lsi08g01114 Csa02g02305 . Cme04g00317
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002891 1 3 1 2 0 1 4 1 1 2 2 1 2 2 2 2 1 3 3 2 2 2 1 1 2 0 2 3 4 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car12g00258 Car_Chr12 FPKM 30.801361 33.142948 26.42989 26.501984 18.966322 21.407841 20.78631 28.41379 28.6786 27.693892